Browse Element(s) Details


Os.10942.2.S1_x_at

Description gb:AK120824.1
DB_XREF= gi:37990447
TID=Os.10942.2
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative auxin-induced protein (OSJNBa0006I13.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019D13, full insert sequence.
FL= gb:AK120824.1 gb:AK072391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0241011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02360OsAffx.14503.1.S1_at11/115+749242..749484hypothetical protein
LOC_Os05g02370NANA5+751337..751648hypothetical protein
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed
LOC_Os05g02400OsAffx.4236.1.S1_at10/115+766883..769735RNA recognition motif family protein, expressed
LOC_Os05g02410Os.10942.2.S1_x_at11/115+769915..772696expressed protein
LOC_Os05g02410OsAffx.26693.1.S1_at1/115+769915..772696expressed protein
LOC_Os05g02420Os.17902.1.S1_at11/115+779253..781382expressed protein
LOC_Os05g02420OsAffx.5031.3.S1_x_at1/115+779253..781382expressed protein
LOC_Os05g02430Os.2987.3.S1_x_at1/115+788032..788677transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10942.2.S1_x_at--663--8191Chr05:770194..770218 (25 bp)
GGAAGGGCCACAAGTGCGACCGCAT
LOC_Os05g02410
Os.10942.2.S1_x_at--428--4971Chr05:770215..770341 (25 bp)
GCATCTCCGCCGAGAAGCGTGCGAA
LOC_Os05g02410
Os.10942.2.S1_x_at--191--4011Chr05:770334..770358 (25 bp)
CGTGCGAACACGGTTGAGCTGATGA
LOC_Os05g02410
Os.10942.2.S1_x_at--144--2751Chr05:770358..770382 (25 bp)
AAGAAGATGCCCCAGATGCTCCTTG
LOC_Os05g02410
Os.10942.2.S1_x_at--776--1371Chr05:772334..772358 (25 bp)
AGAGCTGAGCTCAAGCTACTCGATA
LOC_Os05g02410
Os.10942.2.S1_x_at--100--3791Chr05:772352..772376 (25 bp)
CTCGATAAGAATGCTGCTCTGCCTA
LOC_Os05g02410
Os.10942.2.S1_x_at--352--8491Chr05:772412..772436 (25 bp)
TGGCTGGAGGTGATCTGTTTCTTTC
LOC_Os05g02410
Os.10942.2.S1_x_at--914--10651Chr05:772455..772479 (25 bp)
TTCCTGCTGCCTAAGGCACTTTGTA
LOC_Os05g02410
Os.10942.2.S1_x_at--721--6591Chr05:772492..772516 (25 bp)
GATTGCTTCTATAGTTCCCAACACT
LOC_Os05g02410
Os.10942.2.S1_x_at--397--5471Chr05:772559..772583 (25 bp)
GAACTGACTTCTTTCTTGTTATGGA
LOC_Os05g02410
Os.10942.2.S1_x_at--547--3371Chr05:772634..772658 (25 bp)
CACCATTTGGTGACTGTTTCGTTAG
LOC_Os05g02410
Target Sequence 
GGAAGGGCCACAAGTGCGACCGCATCTCCGCCGAGAAGCGTGCGAACACGGTTGAGCTGATGAAGAAGATGCCCCAGATG
CTCCTTGACTACAAGAAACGTAGATGGGAGAAAAAGATGAAAGAGGAGGAGAGTGGAAAGAGCTGAGCTCAAGCTACTCG
ATAAGAATGCTGCTCTGCCTAAATAAGNTTGAATCTGATATAGTGGCTTCAAATGATGGCTGGAGGTGATCTGTTTCTTT
CCCTTGTTGGCCACCAGCTTTCCTGCTGCCTAAGGCACTTTGTAGTGCTGATATTTGATTGCTTCTATAGTTCCCAACAC
TTGGGTCAATGANTCATGATCTTACCCAGGCNCAACTTCAATTGAACTGACTTCTTTCTTGTTATGGATCAACTATGATA
GCACTTCTGTTGAATTTGTTCATCATGTATCATATTCACACCATTTGGTGACTGTTTCGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10942.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis