Browse Element(s) Details


OsAffx.4236.1.S1_at

Description tigr:9633.m00159
TID=OsAffx.4236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0240010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02360OsAffx.14503.1.S1_at11/115+749242..749484hypothetical protein
LOC_Os05g02370NANA5+751337..751648hypothetical protein
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed
LOC_Os05g02400OsAffx.4236.1.S1_at10/115+766883..769735RNA recognition motif family protein, expressed
LOC_Os05g02410Os.10942.2.S1_x_at11/115+769915..772696expressed protein
LOC_Os05g02410OsAffx.26693.1.S1_at1/115+769915..772696expressed protein
LOC_Os05g02420Os.17902.1.S1_at11/115+779253..781382expressed protein
LOC_Os05g02420OsAffx.5031.3.S1_x_at1/115+779253..781382expressed protein
LOC_Os05g02430Os.2987.3.S1_x_at1/115+788032..788677transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4236.1.S1_at--19--5991Chr05:767188..767212 (25 bp)
GAGACAAAGTCTGCACCATCTATCA
LOC_Os05g02400
OsAffx.4236.1.S1_at--930--1731Chr05:767174..767198 (25 bp)
ACCATCTATCACTCCCGAGGATAAT
LOC_Os05g02400
OsAffx.4236.1.S1_at--1094--5371Chr05:767140..767164 (25 bp)
GAAGAATCAAATTCAGCTCCCTCCA
LOC_Os05g02400
OsAffx.4236.1.S1_at--135--391Chr05:767069..767093 (25 bp)
ATCAGCTTGCCCCAACAAAGTTGCT
LOC_Os05g02400
OsAffx.4236.1.S1_at--147--2831Chr05:767052..767076 (25 bp)
AAGTTGCTGCAGTCAATTCTGACAT
LOC_Os05g02400
OsAffx.4236.1.S1_at--658--5591Chr05:767024..767048 (25 bp)
GAAATCTTATGGTGGCTCAAGTACT
LOC_Os05g02400
OsAffx.4236.1.S1_at--193--9731Chr05:767008..767032 (25 bp)
TCAAGTACTATACCTTCAGCCACTT
LOC_Os05g02400
OsAffx.4236.1.S1_at--588--3271Chr05:766956..766980 (25 bp)
CAAACCCTGTGCCTGCGAAGAAAAA
LOC_Os05g02400
OsAffx.4236.1.S1_at--920--10431Chr05:766916..766940 (25 bp)
TTATGAATGTGGCATCGCTGGCCAT
LOC_Os05g02400
OsAffx.4236.1.S1_at--851--451Chr05:766893..766917 (25 bp)
ATCTCGCGTCGGAATGCCCAAACAA
LOC_Os05g02400
OsAffx.4236.1.S1_at--1081--5231Chr05:766727..766751 (25 bp)
GACACTTATATTTCTTTTACCTTTG
NONE
Target Sequence 
GAGACAAAGTCTGCACCATCTATCACTCCCGAGGATAATAAAATAGGTGAAGAATCAAATTCAGCTCCCTCCAAGAAGAG
GCGGAAATGCTATGAATGCGGCATTCCTGGTCATCTCTCATCAGCTTGCCCCAACAAAGTTGCTGCAGTCAATTCTGACA
TGGAGAAATCTTATGGTGGCTCAAGTACTATACCTTCAGCCACTTCAGATGGAAATAAGGCTAGTGATGACACAAACCCT
GTGCCTGCGAAGAAAAAGAAGAGGCGGACATGTTATGAATGTGGCATCGCTGGCCATCTCGCGTCGGAATGCCCAAACAA
AACTACCTGATCGAATGGTTGTGTTACTGTTTTGGATTTTTGTAGCACTAGAAGTGTCCTTCACTGGACACGAGTTATAT
TCATGGAAGGGATAAAGAATTTGATTCAGAGAAATTTTTGTAGGCAATCTAGTGTGCAATAGACACTTATATTTCTTTTA
CCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis