Browse Element(s) Details


OsAffx.26693.1.S1_at

Description tigr:9633.m00160
TID=OsAffx.26693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g024101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02360OsAffx.14503.1.S1_at11/115+749242..749484hypothetical protein
LOC_Os05g02370NANA5+751337..751648hypothetical protein
LOC_Os05g02380OsAffx.4235.1.S1_at10/115+755555..757894hypothetical protein
LOC_Os05g02380Os.53712.1.S1_x_at1/115+755555..757894hypothetical protein
LOC_Os05g02390Os.55911.1.S1_at11/115+761238..762121Zinc finger, C2H2 type family protein, expressed
LOC_Os05g02400OsAffx.4236.1.S1_at10/115+766883..769735RNA recognition motif family protein, expressed
LOC_Os05g02410Os.10942.2.S1_x_at11/115+769915..772696expressed protein
LOC_Os05g02410OsAffx.26693.1.S1_at1/115+769915..772696expressed protein
LOC_Os05g02420Os.17902.1.S1_at11/115+779253..781382expressed protein
LOC_Os05g02420OsAffx.5031.3.S1_x_at1/115+779253..781382expressed protein
LOC_Os05g02430Os.2987.3.S1_x_at1/115+788032..788677transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26693.1.S1_at--887--10291Chr05:772670..772694 (25 bp)
TTTCCTGCTGTGATGATCTCAGCCG
LOC_Os05g02410
OsAffx.26693.1.S1_at--925--451Chr05:772685..772709 (25 bp)
ATCTCAGCCGATACTTCTAGTGTCA
NONE
OsAffx.26693.1.S1_at--262--2731Chr05:772709..772733 (25 bp)
AAGAATTAGTCTCCTTTGCTGCCCA
NONE
OsAffx.26693.1.S1_at--461--9251Chr05:772720..772744 (25 bp)
TCCTTTGCTGCCCATGAATGACTCA
NONE
OsAffx.26693.1.S1_at--622--5271Chr05:772735..772759 (25 bp)
GAATGACTCATGAATCGCGGCGACT
NONE
OsAffx.26693.1.S1_at--1033--5251Chr05:772746..772770 (25 bp)
GAATCGCGGCGACTTCAGATAAAAC
NONE
OsAffx.26693.1.S1_at--811--2391Chr05:772767..772791 (25 bp)
AAACATGTAGTTTCCAGAACCCAGT
NONE
OsAffx.26693.1.S1_at--1002--6811Chr05:772776..772800 (25 bp)
GTTTCCAGAACCCAGTAGTGAGTGT
NONE
OsAffx.26693.1.S1_at--813--1171Chr05:772789..772813 (25 bp)
AGTAGTGAGTGTGCTGCCCAGTTGC
NONE
OsAffx.26693.1.S1_at--835--2511Chr05:772833..772857 (25 bp)
AACTACTATTCTGCCCATTACCTTT
NONE
OsAffx.26693.1.S1_at--921--10211Chr05:772839..772863 (25 bp)
TATTCTGCCCATTACCTTTGCATCG
NONE
Target Sequence 
TTTCCTGCTGTGATGATCTCAGCCGATACTTCTAGTGTCAAGAATTAGTCTCCTTTGCTGCCCATGAATGACTCATGAAT
CGCGGCGACTTCAGATAAAACATGTAGTTTCCAGAACCCAGTAGTGAGTGTGCTGCCCAGTTGCTCCCATGTCATTCCCC
CACAACTACTATTCTGCCCATTACCTTTGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis