Browse Element(s) Details


Os.10946.1.S1_at

Description gb:AK105458.1
DB_XREF= gi:32990667
TID=Os.10946.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0006L06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-E04, full insert sequence.
FL= gb:AK105458.1 gb:AK073137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3285011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10946.1.S1_at--1020--5631Chr10:16863474..16863498 (25 bp)
GACACGCAAGGATCGGATTCTCTAG
LOC_Os10g32850
Os.10946.1.S1_at--419--10851Chr10:16863421..16863445 (25 bp)
TTGGGATTCAGCAGAGCCCTGACAA
LOC_Os10g32850
Os.10946.1.S1_at--1001--9811Chr10:16863364..16863388 (25 bp)
TAAAATCTGGCGTCACCGACAAGCT
LOC_Os10g32850
Os.10946.1.S1_at--952--5591Chr10:16863347..16863371 (25 bp)
GACAAGCTGGTTCGTTAGCTTCCTT
LOC_Os10g32850
Os.10946.1.S1_at--815--10671Chr10:16863258..16863282 (25 bp)
TTCCTTCCATGGGTGCTTGTTTACA
LOC_Os10g32850
Os.10946.1.S1_at--128--1191Chr10:16863234..16863258 (25 bp)
AGTAGCGGCTATACAGGCCTTCTAG
LOC_Os10g32850
Os.10946.1.S1_at--413--8431Chr10:16863219..16863243 (25 bp)
GGCCTTCTAGGCCTTAGATTAGCAG
LOC_Os10g32850
Os.10946.1.S1_at--655--6551Chr10:16863203..16863227 (25 bp)
GATTAGCAGTTATCGCTCTGAAGTT
LOC_Os10g32850
Os.10946.1.S1_at--1056--7551Chr10:16863131..16863155 (25 bp)
GGGCCATAACTCCATAATCCTATAT
LOC_Os10g32850
Os.10946.1.S1_at--219--2451Chr10:16863041..16863065 (25 bp)
AAAATCTTCTGAGCACTGGTGTGGA
LOC_Os10g32850
Os.10946.1.S1_at--700--6611Chr10:16863018..16863042 (25 bp)
GATTGGCTCTAGTAACTGCTGATCC
LOC_Os10g32850
Target Sequence 
GACACGCAAGGATCGGATTCTCTAGATCTTCTATTTGACTTTGAGTTTGAGGATTGGGATTCAGCAGAGCCCTGACAAAC
AACCTCCGCATTTNTGAACCCCAAGGACAATAAAATCTGGCGTCACCGACAAGCTGGTTCGTTAGCTTCCTTCCTAGGAA
GAGGAAGAGATGTTCCTTGTACATTCTGTAGGTTCAGTGGTAGAAATGTTTTTTTTTTCCTTCCATGGGTGCTTGTTTAC
AGTAGCGGCTATACAGGCCTTCTAGGCCTTAGATTAGCAGTTATCGCTCTGAAGTTTTAGGGATGAAGTTCAATTCCCAA
ACTGTTGTTGATCATATATCTATGGGCCATAACTCCATAATCCTATATCTATGGTCCATAACTCCATAATCCAATNGCCA
GAATGCATGTTTCAGGTAGCATAGCACTGAAGCAAAATCTTCTGAGCACTGGTGTGGATTGGCTCTAGTAACTGCTGATC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis