Browse Element(s) Details


Os.11024.1.S1_at

Description gb:AK102113.1
DB_XREF= gi:32987322
TID=Os.11024.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NBS-LRR type resistance protein (OSJNBb0042K08.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084G11, full insert sequence.
FL= gb:AK102113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0740011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07370Os.25139.1.A1_at5/1110+3862435..3868801hypothetical protein
LOC_Os10g07370OsAffx.29612.1.S1_at1/1110+3862435..3868801hypothetical protein
LOC_Os10g07380OsAffx.30330.1.S1_at9/1110+3875801..3880800expressed protein
LOC_Os10g07390OsAffx.30331.1.S1_at11/1110+3887830..3889046hypothetical protein
LOC_Os10g07400Os.11024.1.S1_at11/1110+3892249..3896819NB-ARC domain containing protein, expressed
LOC_Os10g07410OsAffx.380.1.S1_at11/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.8801.1.S1_at3/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.1283.1.S1_at2/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07420OsAffx.25595.2.S1_x_at3/1110+3910457..3910903hypothetical protein
LOC_Os10g07420OsAffx.25595.2.S1_at2/1110+3910457..3910903hypothetical protein
LOC_Os10g07430Os.46567.1.S1_at11/1110+3917158..3919926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11024.1.S1_at--635--5951Chr10:3892985..3893009 (25 bp)
GAGCAATGCCCCAATCTAAGGGAGC
LOC_Os10g07400
Os.11024.1.S1_at--911--4911Chr10:3892962..3892986 (25 bp)
GCTTCCAAGCTTCATGCAAGATCTC
LOC_Os10g07400
Os.11024.1.S1_at--5--1291Chr10:3892944..3892968 (25 bp)
AGATCTCACTAACCATCAGAGGCAG
LOC_Os10g07400
Os.11024.1.S1_at--1102--6851Chr10:3892915..3892939 (25 bp)
GTATTCATTAAGGATTTCCCGAGCA
LOC_Os10g07400
Os.11024.1.S1_at--745--1231Chr10:3892866..3892890 (25 bp)
AGTTGATTACTATCTCCCCATAAAA
LOC_Os10g07400
Os.11024.1.S1_at--1030--5531Chr10:3892574..3892598 (25 bp)
GAAATCCCTTTTAGGCACCAATTCA
LOC_Os10g07400
Os.11024.1.S1_at--1066--5971Chr10:3892485..3892509 (25 bp)
GAGACTGCTCATAATTTGTTAACCG
LOC_Os10g07400
Os.11024.1.S1_at--752--7391Chr10:3892391..3892415 (25 bp)
GTGATGCTCTGAATACCATGTCCCT
LOC_Os10g07400
Os.11024.1.S1_at--1107--271Chr10:3892379..3892403 (25 bp)
ATACCATGTCCCTGTTTCTAAATTG
LOC_Os10g07400
Os.11024.1.S1_at--962--2291Chr10:3892340..3892364 (25 bp)
AAATGTGCCATGTCTAATTCAGTTT
LOC_Os10g07400
Os.11024.1.S1_at--380--811Chr10:3892270..3892294 (25 bp)
ATGGTCGTTCGAAGTCCTGTTTGTA
LOC_Os10g07400
Target Sequence 
GAGCAATGCCCCAATCTAAGGGAGCTTCCAAGCTTCATGCAAGATCTCACTAACCATCAGAGGCAGGGGGGTATTCATTA
AGGATTTCCCGAGCATAATTATATAAAGGGATGACAATTAGTTGATTACTATCTCCCCATAAAATCTTCATGGAGGTATA
GAGCTTATGCTAAAAGAAAAGCCCCACAGGAAGTGAAATAGGTATGTATGGAAGTATAGCAACCAGTGAAGCTAAGAAAT
CCCTTTTAGGCACCAATTCAANGGATTTCCTTTTGTTGCAGAGAGGACCAAAGTACACACTAGCTGGGATGAAAAACAAT
AACTGAGACTGCTCATAATTTGTTAACCGAATAGGCCACAAGTTTGAATTACGATGCTCATTAGGGTGATTGTAAGGTTG
CTCTTTTTGAAATGTATAGTGATGCTCTGAATACCATGTCCCTGTTTCTAAATTGTAATGATGCATTTCAAATGTGCCAT
GTCTAATTCAGTTTATGTTTTTCACATGTTTAATTATTTCAGACCTTAATTGAACTTATATGGTCGTTCGAAGTCCTGTT
TGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis