Browse Element(s) Details


Os.11042.1.S1_at

Description gb:AK072286.1
DB_XREF= gi:32982309
TID=Os.11042.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012O04, full insert sequence.
FL= gb:AK072286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3793011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37910Os.51685.1.S1_s_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.51685.1.S1_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.11932.1.S1_at10/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37920NANA5+22142899..22143276hypothetical protein
LOC_Os05g37930Os.11042.1.S1_at11/115+22155809..22158446expressed protein
LOC_Os05g37940NANA5+22166978..22167441transposon protein, putative, unclassified
LOC_Os05g37950Os.18125.1.S1_at10/115+22179862..22183821expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11042.1.S1_at--653--2271Chr05:22156385..22156409 (25 bp)
AAATCCATGTCTTCGGTTTGGTGGT
LOC_Os05g37930
Os.11042.1.S1_at--1021--4691Chr05:22156295..22156319 (25 bp)
GCGGCTTGTGCAGCTTGCAAGCAAG
LOC_Os05g37930
Os.11042.1.S1_at--961--10571Chr05:22156203..22156227 (25 bp)
TTCTACATCATCCATGGCTTTGCTT
LOC_Os05g37930
Os.11042.1.S1_at--671--3271Chr05:22156086..22156110 (25 bp)
CAAAAGAAGCTTGCCGTGGGCTCCG
LOC_Os05g37930
Os.11042.1.S1_at--234--7911Chr05:22156068..22156092 (25 bp)
GGCTCCGTGAATAAGGGCGTTCCTT
LOC_Os05g37930
Os.11042.1.S1_at--642--3151Chr05:22156007..22156031 (25 bp)
AATTGCCATTTTTCTTGTACTAGCT
LOC_Os05g37930
Os.11042.1.S1_at--389--8751Chr05:22155992..22156016 (25 bp)
TGTACTAGCTTATAGGTGCCCTAAC
LOC_Os05g37930
Os.11042.1.S1_at--536--9171Chr05:22155976..22156000 (25 bp)
TGCCCTAACCTTCTGTTTTGGTTCG
LOC_Os05g37930
Os.11042.1.S1_at--563--1191Chr05:22155923..22155947 (25 bp)
AGTAGTTCGGTGCTTAGCCGCAGCA
LOC_Os05g37930
Os.11042.1.S1_at--1125--1231Chr05:22155865..22155889 (25 bp)
AGTTGTATTTGTACCATCAAAGCCT
LOC_Os05g37930
Os.11042.1.S1_at--38--7771Chr05:22155825..22155849 (25 bp)
GGTGAGTATTTCTTACTAGTTGACA
LOC_Os05g37930
Target Sequence 
AAATCCATGTCTTCGGTTTGGTGGTTTGGCAGAGTGGTTTGGAAGGAATAATAATAAGTGGTTCTTTTGGAGGGCGAGAG
AGAAATGTTAGCGGCTTGTGCAGCTTGCAAGCAAGAAGTGACAAGGTATCATCAAAGTGGTTTATGGATGGGTCATCTTG
GGGGAGCCAAAAATAAACCCATTTCTACATCATCCATGGCTTTGCTTGCTTTGGGTGCTTGCCAAGAAGTNAAGTACCAG
CGCACACCCAGCTATAAGGTCTCTCTCCCTCCTCCCTCCTTTTTGCAGTCTTTTACTTGCAAAAGAAGCTTGCCGTGGGC
TCCGTGAATAAGGGCGTTCCTTTCTTAAGGAAAAAAAAGAAAAGGAAACTATGAATTTAATTGCCATTTTTCTTGTACTA
GCTTATAGGTGCCCTAACCTTCTGTTTTGGTTCGGTACAATAAGATTCTTATTTAGGGGTGTAGTAGTTCGGTGCTTAGC
CGCAGCAGCAGCAAAGTTGGGCTGGGTGTTGTTAAACAACAGTTGTATTTGTACCATCAAAGCCTTAATATATGAATGAT
GGTGAGTATTTCTTACTAGTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis