Browse Element(s) Details


Os.51685.1.S1_s_at

Description gb:AK063393.1
DB_XREF= gi:32973411
TID=Os.51685.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H05, full insert sequence.
FL= gb:AK063393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3791011/11phosphatidic acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37890OsAffx.15002.1.S1_at11/115+22116258..22116719expressed protein
LOC_Os05g37900Os.54186.1.S1_at11/115+22125415..22129240zinc finger family protein, putative, expressed
LOC_Os05g37910Os.51685.1.S1_s_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.51685.1.S1_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.11932.1.S1_at10/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37920NANA5+22142899..22143276hypothetical protein
LOC_Os05g37930Os.11042.1.S1_at11/115+22155809..22158446expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51685.1.S1_s_at--228--1311Chr05:22132744..22132768 (25 bp)
AGATGAACTTGCCTATACTTTATAC
LOC_Os05g37910
Os.51685.1.S1_s_at--376--2051Chr05:22132728..22132752 (25 bp)
ACTTTATACTATGCTGGATCCTACT
LOC_Os05g37910
Os.51685.1.S1_s_at--495--10131Chr05:22132719..22132743 (25 bp)
TATGCTGGATCCTACTTTCTCCGTC
LOC_Os05g37910
Os.51685.1.S1_s_at--483--6031Chr05:22132672..22132696 (25 bp)
GAGATGCGATAACCTGCTCAGATCA
LOC_Os05g37910
Os.51685.1.S1_s_at--1098--9791Chr05:22132663..22132687 (25 bp)
TAACCTGCTCAGATCATTATACTAG
LOC_Os05g37910
Os.51685.1.S1_s_at--296--6431Chr05:22132652..22132676 (25 bp)
GATCATTATACTAGAATACGTCACA
LOC_Os05g37910
Os.51685.1.S1_s_at--801--5231Chr05:22132639..22132663 (25 bp)
GAATACGTCACATCTCATGATTTGT
LOC_Os05g37910
Os.51685.1.S1_s_at--1155--10731Chr05:22132611..22132635 (25 bp)
TTGAGACGGAGCGAGTACTACTAAA
LOC_Os05g37910
Os.51685.1.S1_s_at--537--3931Chr05:22132605..22132629 (25 bp)
CGGAGCGAGTACTACTAAATTTGTT
LOC_Os05g37910
Os.51685.1.S1_s_at--298--11Chr05:22132590..22132614 (25 bp)
TAAATTTGTTTACAACCCTTGCTAG
LOC_Os05g37910
Os.51685.1.S1_s_at--755--9851Chr05:22132580..22132604 (25 bp)
TACAACCCTTGCTAGTTTAATTACT
LOC_Os05g37910
Target Sequence 
AGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCG
ATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAATT
TGTTTACAACCCTTGCTAGTTTAATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51685.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis