Browse Element(s) Details


OsAffx.15002.1.S1_at

Description tigr:9633.m03503
TID=OsAffx.15002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3789011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein
LOC_Os05g37870NANA5+22096464..22098263hypothetical protein
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37890OsAffx.15002.1.S1_at11/115+22116258..22116719expressed protein
LOC_Os05g37900Os.54186.1.S1_at11/115+22125415..22129240zinc finger family protein, putative, expressed
LOC_Os05g37910Os.51685.1.S1_s_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.51685.1.S1_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.11932.1.S1_at10/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15002.1.S1_at--174--5951Chr05:22116660..22116684 (25 bp)
GAGAAGCCCGGAGAAGTCCCAGTGT
LOC_Os05g37890
OsAffx.15002.1.S1_at--27--8071Chr05:22116651..22116675 (25 bp)
GGAGAAGTCCCAGTGTTGCTTAACA
LOC_Os05g37890
OsAffx.15002.1.S1_at--198--2851Chr05:22116647..22116671 (25 bp)
AAGTCCCAGTGTTGCTTAACAGCAG
LOC_Os05g37890
OsAffx.15002.1.S1_at--612--1111Chr05:22116640..22116664 (25 bp)
AGTGTTGCTTAACAGCAGATATCGC
LOC_Os05g37890
OsAffx.15002.1.S1_at--293--1531Chr05:22116632..22116651 (20 bp)
AGCAGATATCGCCAGGTCAGATCAT
LOC_Os05g37890
OsAffx.15002.1.S1_at--251--10151Chr05:22116351..22116645 (25 bp)
TATCGCCAGGTCAGATCATGGCCAA
LOC_Os05g37890
OsAffx.15002.1.S1_at--156--1031Chr05:22116344..22116364 (21 bp)
AGGTCAGATCATGGCCAAATTCAAG
LOC_Os05g37890
OsAffx.15002.1.S1_at--33--1271Chr05:22116339..22116363 (25 bp)
AGATCATGGCCAAATTCAAGATAAC
LOC_Os05g37890
OsAffx.15002.1.S1_at--464--3231Chr05:22116323..22116347 (25 bp)
CAAGATAACTTCCAGGTATTGACAA
LOC_Os05g37890
OsAffx.15002.1.S1_at--146--9811Chr05:22116318..22116342 (25 bp)
TAACTTCCAGGTATTGACAAACATG
LOC_Os05g37890
OsAffx.15002.1.S1_at--521--911Chr05:22116288..22116312 (25 bp)
AGGAATACATACAGTCAAATTCAGT
LOC_Os05g37890
Target Sequence 
GAGAAGCCCGGAGAAGTCCCAGTGTTGCTTAACAGCAGATATCGCCAGGTCAGATCATGGCCAAATTCAAGATAACTTCC
AGGTATTGACAAACATGTTTAAAGGAATACATACAGTCAAATTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis