Browse Element(s) Details


Os.48933.1.S1_at

Description gb:AK071872.1
DB_XREF= gi:32981895
TID=Os.48933.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123J10, full insert sequence.
FL= gb:AK071872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3788011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein
LOC_Os05g37870NANA5+22096464..22098263hypothetical protein
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37890OsAffx.15002.1.S1_at11/115+22116258..22116719expressed protein
LOC_Os05g37900Os.54186.1.S1_at11/115+22125415..22129240zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48933.1.S1_at--164--8171Chr05:22104978..22105002 (25 bp)
GGAAAATAGTTTCGCAGCTGCATTA
LOC_Os05g37880
Os.48933.1.S1_at--170--6251Chr05:22105005..22105029 (25 bp)
GATGGAGATGACACTTCCTCACAAG
LOC_Os05g37880
Os.48933.1.S1_at--1111--5631Chr05:22105066..22105090 (25 bp)
GACAGAGACCGGTCATTTTGATTAT
LOC_Os05g37880
Os.48933.1.S1_at--1034--8951Chr05:22105102..22105126 (25 bp)
TGACAACACTCGTAGTTCAGGGCGT
LOC_Os05g37880
Os.48933.1.S1_at--178--2551Chr05:22105241..22105265 (25 bp)
AACTCTTCATGGAGGCTGATTGTAG
LOC_Os05g37880
Os.48933.1.S1_at--921--8751Chr05:22105261..22105285 (25 bp)
TGTAGTTAGTCCATACACACTTCCC
LOC_Os05g37880
Os.48933.1.S1_at--85--9311Chr05:22105282..22105306 (25 bp)
TCCCCTGTTCTTGACGTTATCTGAT
LOC_Os05g37880
Os.48933.1.S1_at--613--471Chr05:22105300..22105324 (25 bp)
ATCTGATTCGTTGTAGTGGGCATCT
LOC_Os05g37880
Os.48933.1.S1_at--85--7491Chr05:22105315..22105339 (25 bp)
GTGGGCATCTTACATCTGGATGGAT
LOC_Os05g37880
Os.48933.1.S1_at--59--191Chr05:22105392..22105416 (25 bp)
ATTTCAGTAGCTTAGGTCAGATCAA
LOC_Os05g37880
Os.48933.1.S1_at--743--7111Chr05:22105447..22105471 (25 bp)
GTCATGCACATCAGATTAGCTTCTT
LOC_Os05g37880
Target Sequence 
GGAAAATAGTTTCGCAGCTGCATTAAGGATGGAGATGACACTTCCTCACAAGTCACAGATTGCATCAAAGTGGAAGTCCT
AGTAAACTGACAGAGACCGGTCATTTTGATTATTTATCCTAGACTGACAACACTCGTAGTTCAGGGCGTGGGGCCAAGAA
GTGCTGCATTTTCAAAGAAATGTTCATCCAAGGAAGGAAGATGAGATTCTGAAGTAGTTGAAGAATTAAATGTATCATCG
ATTATAGGAACAGCCAGAAGGAAAACTCTTCATGGAGGCTGATTGTAGTTAGTCCATACACACTTCCCCTGTTCTTGACG
TTATCTGATTCGTTGTAGTGGGCATCTTACATCTGGATGGATTCATAACAGTAATGGAACAAACCACACTATCAGTATAG
AATGACAGACAAATATTTCAGTAGCTTAGGTCAGATCAATAATTCTTTGTAATCTAGCAATGTGCCAATGTCATGCACAT
CAGATTAGCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis