Browse Element(s) Details


OsAffx.4551.1.S1_at

Description tigr:9633.m03502
TID=OsAffx.4551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant protein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g378809/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein
LOC_Os05g37870NANA5+22096464..22098263hypothetical protein
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37890OsAffx.15002.1.S1_at11/115+22116258..22116719expressed protein
LOC_Os05g37900Os.54186.1.S1_at11/115+22125415..22129240zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4551.1.S1_at--74--8211Chr05:22105526..22105599 (25 bp)
GGAATCAATGAAAACCGTCTAAGGA
LOC_Os05g37880
OsAffx.4551.1.S1_at--1057--9751Chr05:22105594..22105618 (25 bp)
TAAGGAAGGTGGCTTCACCCCATGA
LOC_Os05g37880
OsAffx.4551.1.S1_at--107--1791Chr05:22105610..22105634 (25 bp)
ACCCCATGAGACGTTTACCGAGGCA
LOC_Os05g37880
OsAffx.4551.1.S1_at--712--991Chr05:22105672..22105696 (25 bp)
AGGAGGCCTCAGACGCAGAGGAATC
LOC_Os05g37880
OsAffx.4551.1.S1_at--810--3511Chr05:22105733..22105757 (25 bp)
CATGACGGGCCTGAGCGAGCTCAGC
LOC_Os05g37880
OsAffx.4551.1.S1_at--594--1571Chr05:22105750..22105774 (25 bp)
AGCTCAGCGAGCAGTCGGAATCCGG
LOC_Os05g37880
OsAffx.4551.1.S1_at--631--7171Chr05:22105763..22105787 (25 bp)
GTCGGAATCCGGCACTGACCACGGC
LOC_Os05g37880
OsAffx.4551.1.S1_at--539--5171Chr05:22105821..22105845 (25 bp)
GAATACAAACCTGCCGGAATCGGGT
LOC_Os05g37880
OsAffx.4551.1.S1_at--710--4391Chr05:22105856..22105880 (25 bp)
GCCACTCCCCGGAAGAGTAGCGGGA
LOC_Os05g37880
OsAffx.4551.1.S1_at--660--2191Chr05:22105922..22105946 (25 bp)
ACACACACGGAGACCGGCAGCCGGA
NONE
OsAffx.4551.1.S1_at--324--10271Chr05:22105954..22105978 (25 bp)
TTCTCCTTCCGAAAGACACGGGCCG
NONE
Target Sequence 
GGAATCAATGAAAACCGTCTAAGGAAGGTGGCTTCACCCCATGAGACGTTTACCGAGGCAGGAGGCAGTGTCGAGGCGGA
AGTCGAAGACGGCGGAGAGGAGGCCTCAGACGCAGAGGAATCGGGACGAGCGGAGGTGGTCGGGGGATGCGAGTGTGCCA
TGACGGGCCTGAGCGAGCTCAGCGAGCAGTCGGAATCCGGCACTGACCACGGCCACGACGCGGCGGCGGGGTTCGGACGA
GGCGAGGAATACAAACCTGCCGGAATCGGGTACCCCACTCGGCCACTCCCCGGAAGAGTAGCGGGAGAGCCGGCGGCGAT
CCGGCGGCGGCGCGGGGCGCTTCTCCGACACACACGGAGACCGGCAGCCGGAGAGGCCCTTCTCCTTCCGAAAGACACGG
GCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis