Browse Element(s) Details


Os.14077.1.S1_at

Description gb:AK108341.1
DB_XREF= gi:32993550
TID=Os.14077.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A12, full insert sequence.
FL= gb:AK108341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3783010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein
LOC_Os05g37810OsAffx.15200.2.S1_x_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.2.S1_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.3.S1_s_at4/115+22066811..22067634hypothetical protein
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein
LOC_Os05g37870NANA5+22096464..22098263hypothetical protein
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14077.1.S1_at--531--5731Chr05:22078688..22078712 (25 bp)
GACGCAATACTACAACGGGCTCAAT
LOC_Os05g37830
Os.14077.1.S1_at--717--5611NONE
GACAAGCAACACCACACGACTGGTA
NONE
Os.14077.1.S1_at--797--4031Chr05:22077586..22077610 (25 bp)
CGTTGCCTACTCATCTGACAGCATT
LOC_Os05g37830
Os.14077.1.S1_at--505--31Chr05:22077530..22077554 (25 bp)
ATTGGATACCATCCTCAGAGACGGT
LOC_Os05g37830
Os.14077.1.S1_at--924--7891Chr05:22077365..22077389 (25 bp)
GGTTCCCTTCTGCTGTATGAATCTT
LOC_Os05g37830
Os.14077.1.S1_at--684--5931Chr05:22077305..22077329 (25 bp)
GAGCAGCCACTTCTGTATATCGGAG
LOC_Os05g37830
Os.14077.1.S1_at--959--5551Chr05:22077256..22077280 (25 bp)
GAAAGCGCTGCAACTGCAAGGTTTA
LOC_Os05g37830
Os.14077.1.S1_at--956--5471Chr05:22077191..22077215 (25 bp)
GAACTTGTCGTATGCAACTTCACTG
LOC_Os05g37830
Os.14077.1.S1_at--650--7511Chr05:22077119..22077143 (25 bp)
GTGGATAGAGTACCAGTTCTGTCAG
LOC_Os05g37830
Os.14077.1.S1_at--1127--6711Chr05:22077104..22077128 (25 bp)
GTTCTGTCAGTTTTTTCTCTTTGCT
LOC_Os05g37830
Os.14077.1.S1_at--276--7071Chr05:22077079..22077103 (25 bp)
GTAAGGATATTTTCCGTGTGTCTAT
LOC_Os05g37830
Target Sequence 
GACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGAC
CCAATGNTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTNTCCGCTGCANGAGCAACCCTGCAACA
AATGATTGGATACCATCCTCAGAGACGGTNNNNNNNNNNNNNNNNTATTCCAGTTTCAAACANAGCCTAGCAGGAGTGAC
TCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGC
AGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGA
ATCTGTCCTGCTCTTNATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCNAAACTCAGTATCATG
AATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTG
TGTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis