Browse Element(s) Details


Os.9560.1.S1_at

Description gb:AK120548.1
DB_XREF= gi:37990171
TID=Os.9560.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129N15, full insert sequence.
FL= gb:AK120548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3782011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein
LOC_Os05g37810OsAffx.15200.2.S1_x_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.2.S1_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.3.S1_s_at4/115+22066811..22067634hypothetical protein
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein
LOC_Os05g37870NANA5+22096464..22098263hypothetical protein
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9560.1.S1_at--1056--8251Chr05:22075599..22075623 (25 bp)
GGCAGTCATGGCTCTGTCTGGTTAC
LOC_Os05g37820
Os.9560.1.S1_at--213--7191Chr05:22075614..22075638 (25 bp)
GTCTGGTTACGTCGCAGGAGCTTCT
LOC_Os05g37820
Os.9560.1.S1_at--436--4911Chr05:22075633..22075657 (25 bp)
GCTTCTGCAGATTTCCTGATCAAAT
LOC_Os05g37820
Os.9560.1.S1_at--765--6451Chr05:22075650..22075674 (25 bp)
GATCAAATCTGGTTTCTCTGTTGCA
LOC_Os05g37820
Os.9560.1.S1_at--268--9451Chr05:22075680..22075819 (25 bp)
TCGGAAGATTATGCAGTCCATCGGT
LOC_Os05g37820
Os.9560.1.S1_at--419--1131Chr05:22075809..22075833 (25 bp)
AGTCCATCGGTTTTATCGGGCCAGG
LOC_Os05g37820
Os.9560.1.S1_at--962--891Chr05:22075831..22075855 (25 bp)
AGGCGTTTCACTGCTTTGCTTAAGA
LOC_Os05g37820
Os.9560.1.S1_at--422--10491Chr05:22075850..22075874 (25 bp)
TTAAGATTTGCCCAGACGCCATCAG
LOC_Os05g37820
Os.9560.1.S1_at--857--1231Chr05:22075873..22075897 (25 bp)
AGTTGCAGCAGTCCTCATGACCATC
LOC_Os05g37820
Os.9560.1.S1_at--692--691Chr05:22075889..22075913 (25 bp)
ATGACCATCGCCCTGAGCTTGAGTT
LOC_Os05g37820
Os.9560.1.S1_at--324--3651Chr05:22075915..22075939 (25 bp)
CTTCAGTCAAGCTGGATACTTCTGT
LOC_Os05g37820
Target Sequence 
GGCAGTCATGGCTCTGTCTGGTTACGTCGCAGGAGCTTCTGCAGATTTCCTGATCAAATCTGGTTTCTCTGTTGCATTAG
TTCGGAAGATTATGCAGTCCATCGGTTTTATCGGGCCAGGCGTTTCACTGCTTTGCTTAAGATTTGCCCAGACGCCATCA
GTTGCAGCAGTCCTCATGACCATCGCCCTGAGCTTGAGTTCCTTCAGTCAAGCTGGATACTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis