Browse Element(s) Details


Os.54186.1.S1_at

Description gb:AK102413.1
DB_XREF= gi:32987622
TID=Os.54186.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093B10, full insert sequence.
FL= gb:AK102413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3790011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37890OsAffx.15002.1.S1_at11/115+22116258..22116719expressed protein
LOC_Os05g37900Os.54186.1.S1_at11/115+22125415..22129240zinc finger family protein, putative, expressed
LOC_Os05g37910Os.51685.1.S1_s_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.51685.1.S1_at11/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37910Os.11932.1.S1_at10/115+22131387..22136431phosphatidic acid phosphatase, putative, expressed
LOC_Os05g37920NANA5+22142899..22143276hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54186.1.S1_at--981--10811Chr05:22128433..22128457 (25 bp)
TTGGCAAGGGCATCGGTTCCTGAAC
LOC_Os05g37900
Os.54186.1.S1_at--1105--811Chr05:22128473..22128497 (25 bp)
ATGGTTTTCGCCTTTGTTATCTCAT
LOC_Os05g37900
Os.54186.1.S1_at--721--6791Chr05:22128488..22128512 (25 bp)
GTTATCTCATGGCTCTTTCATTTCA
LOC_Os05g37900
Os.54186.1.S1_at--253--10331Chr05:22128503..22128527 (25 bp)
TTTCATTTCAACGTCCCGGGCTAAG
LOC_Os05g37900
Os.54186.1.S1_at--206--3031Chr05:22128560..22128584 (25 bp)
AATGCCATTACTACACACCTGTGGG
LOC_Os05g37900
Os.54186.1.S1_at--338--8511Chr05:22128731..22128755 (25 bp)
TGGAAGGACAATTTCCTCCTGTTTC
LOC_Os05g37900
Os.54186.1.S1_at--948--3871Chr05:22128749..22128773 (25 bp)
CTGTTTCCCTTGTCTGGATGGAGAT
LOC_Os05g37900
Os.54186.1.S1_at--91--6711Chr05:22128800..22128824 (25 bp)
GTTCCGTCAATAGTGCTGTCATGGT
LOC_Os05g37900
Os.54186.1.S1_at--593--6051Chr05:22128834..22128858 (25 bp)
GAGATTGTGCTGTATCCATTCCCTA
LOC_Os05g37900
Os.54186.1.S1_at--927--8891Chr05:22128929..22128953 (25 bp)
TGAGTTCGGAAGCATGTCGCCAGAA
LOC_Os05g37900
Os.54186.1.S1_at--200--8671Chr05:22128968..22128992 (25 bp)
TGTGAAGTTCCTGGGCATATCGCCG
LOC_Os05g37900
Target Sequence 
TTGGCAAGGGCATCGGTTCCTGAACTTTCTTCTTGCTTGCATGGTTTTCGCCTTTGTTATCTCATGGCTCTTTCATTTCA
ACGTCCCGGGCTAAGTTTTGAAACACATGGTCCTCAATAAAAGCTCCAATGCCATTACTACACACCTGTGGGTTGGATTT
AGTAAATCTGAAGAACAGGCTGAGGTGAAGGAAAGTTATGAAGTGGTACAAAAATGTTGGGTGGGGCATGTTGATCTTAA
CTGTGTCAATGGCAATTGCCTCCTTTCACAACGACCAAGATTCCATTAGACAAGAAGCTGGAAGGACAATTTCCTCCTGT
TTCCCTTGTCTGGATGGAGATGAAAACAAAGAATGGAGAATGTGTTTGTTCCGTCAATAGTGCTGTCATGGTTTTCAGGA
AGAGATTGTGCTGTATCCATTCCCTATCTTCTCAGGCAATTTATCATTTATTCTGCTGATTTGGTGTAAGTGTTATCTTC
CAGGAGAAAAATGTGCTGAGTTCGGAAGCATGTCGCCAGAAAGAATAAACAATATTGTGAAGTTCCTGGGCATATCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis