Browse Element(s) Details


Os.11080.1.S1_at

Description gb:AK069047.1
DB_XREF= gi:32979071
TID=Os.11080.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009C11, full insert sequence.
FL= gb:AK069047.1 gb:AK071210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3569011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35650Os.47463.1.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35650Os.14491.2.S1_x_at2/1112+21640362..21645078transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35660NANA12+21646619..21649924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35670Os.7043.1.S1_at11/1112+21658296..21659192Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35680OsAffx.32040.1.S1_at10/1112+21659214..21662145expressed protein
LOC_Os12g35690Os.11080.1.S1_at11/1112+21666549..21667544Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35700NANA12+21668972..21670399hypothetical protein
LOC_Os12g35710Os.18286.1.S1_s_at11/1112+21677787..21680406extensin-like domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11080.1.S1_at--165--9211Chr12:21666997..21667021 (25 bp)
TGCCACGGCTGATCGATCACACCAT
LOC_Os12g35690
Os.11080.1.S1_at--1075--6571Chr12:21667085..21667109 (25 bp)
GATTCGCTTTGTTTCTTTGACGACG
LOC_Os12g35690
Os.11080.1.S1_at--99--1871Chr12:21667110..21667134 (25 bp)
ACGACGATGTGCACGCATATGCATA
LOC_Os12g35690
Os.11080.1.S1_at--995--251Chr12:21667132..21667156 (25 bp)
ATATGCGTGCTAGCGTTTTGTCGAT
LOC_Os12g35690
Os.11080.1.S1_at--906--4851Chr12:21667140..21667164 (25 bp)
GCTAGCGTTTTGTCGATGGATCGAT
LOC_Os12g35690
Os.11080.1.S1_at--614--10591Chr12:21667220..21667244 (25 bp)
TTCTCGTGTTGTTGCCGTGCCACTG
LOC_Os12g35690
Os.11080.1.S1_at--145--9211Chr12:21667237..21667261 (25 bp)
TGCCACTGCGTTCTCTTATTATTAT
LOC_Os12g35690
Os.11080.1.S1_at--69--171Chr12:21667254..21667278 (25 bp)
ATTATTATCCATGTCTACTGTCTCA
LOC_Os12g35690
Os.11080.1.S1_at--16--3051Chr12:21667389..21667413 (25 bp)
AATCCCTTCTACAAGAGGATCGAGG
LOC_Os12g35690
Os.11080.1.S1_at--995--7931Chr12:21667415..21667439 (25 bp)
GGATTTGGACAGGACTTATTTCACA
LOC_Os12g35690
Os.11080.1.S1_at--1085--3131Chr12:21667518..21667542 (25 bp)
AATTAAGCCGATTTCATCTTGTTGC
LOC_Os12g35690
Target Sequence 
TGCCACGGCTGATCGATCACACCATCGCCCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCTGCCGGTGCCGGCGCCG
GCGATGATGATTCGCTTTGTTTCTTTGACGACGACGACGATGTGCACGCATATGCATATGCGTGCTAGCGTTTTGTCGAT
GGATCGATCGATCACCAGGTTAATTAAATAAAAATGACATGAAATAAGGTGTGTGTGTGTTTGTTCTCGTGTTGTTGCCG
TGCCACTGCGTTCTCTTATTATTATCCATGTCTACTGTCTCATTGTATTAGCTACTACTGTTGTCCATTTGTTTCTTTTG
ATTAATTAATTTGCTGCTAATGATGCAGCTATTGTATTTGGGATTTTTGTCCCTGTAAGGTTTTGTTTGTTTAATCCCTT
CTACAAGAGGATCGAGGGGGATTTGGACAGGACTTATTTCACAACTATTGTATGGTGTGGAATTATTCTCCTTCAATCCC
CTCCATTCTCCTTTTCTTGAGGATTAAATGAACAAGGTCTAAATTAAGCCGATTTCATCTTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis