Browse Element(s) Details


Os.18286.1.S1_s_at

Description gb:CA761577
DB_XREF= gi:25805616
DB_XREF=BR060011A10H06.ab1
CLONE=BR060011A10H06.ab1
TID=Os.18286.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18286 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179188.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3571011/11extensin-like domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35670Os.7043.1.S1_at11/1112+21658296..21659192Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35680OsAffx.32040.1.S1_at10/1112+21659214..21662145expressed protein
LOC_Os12g35690Os.11080.1.S1_at11/1112+21666549..21667544Rapid ALkalinization Factor family protein, expressed
LOC_Os12g35700NANA12+21668972..21670399hypothetical protein
LOC_Os12g35710Os.18286.1.S1_s_at11/1112+21677787..21680406extensin-like domain containing protein, putative, expressed
LOC_Os12g35720Os.47463.1.S1_x_at3/1112+21704455..21707899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35720Os.14491.2.S1_x_at3/1112+21704455..21707899transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18286.1.S1_s_at--769--9211Chr12:21678106..21678130 (25 bp)
TCCAGCCCCTGAGGAGCTAATCATT
LOC_Os12g35710
Os.18286.1.S1_s_at--20--6191Chr12:21678096..21678120 (25 bp)
GAGGAGCTAATCATTCTACCGCCGA
LOC_Os12g35710
Os.18286.1.S1_s_at--804--3731Chr12:21678090..21678114 (25 bp)
CTAATCATTCTACCGCCGATCTTAA
LOC_Os12g35710
Os.18286.1.S1_s_at--427--111Chr12:21678084..21678108 (25 bp)
ATTCTACCGCCGATCTTAAGTCACT
LOC_Os12g35710
Os.18286.1.S1_s_at--221--6431Chr12:21678073..21678097 (25 bp)
GATCTTAAGTCACTCCTATGCATCA
LOC_Os12g35710
Os.18286.1.S1_s_at--395--4531Chr12:21678046..21678070 (25 bp)
GCCGCCGCCCCAATTTGAAGGATAT
LOC_Os12g35710
Os.18286.1.S1_s_at--273--4531Chr12:21678043..21678067 (25 bp)
GCCGCCCCAATTTGAAGGATATTAA
LOC_Os12g35710
Os.18286.1.S1_s_at--16--7931Chr12:21678027..21678051 (25 bp)
GGATATTAAGTTATCGTGACAACAC
LOC_Os12g35710
Os.18286.1.S1_s_at--1027--3711Chr12:21677926..21677950 (25 bp)
CTCACGTACTCCCATGAAAGAAAGA
LOC_Os12g35710
Os.18286.1.S1_s_at--307--6891Chr12:21677870..21677894 (25 bp)
GTATATATGTGTACCCTGGAGAAGA
LOC_Os12g35710
Os.18286.1.S1_s_at--893--7471Chr12:21677842..21677866 (25 bp)
GTGTGTGCAATGTGTACAAAGAGGA
LOC_Os12g35710
Target Sequence 
TCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAG
GATATTAAGTTATCGTGACAACACNNNNGGNNNNNCNNNGNNNNNGACAAGGNGCAGCAGCNGTGATCATNAGCAATGCC
TTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCANTTACAAGTATAAATGCANGTAT
ATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18286.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis