Browse Element(s) Details


Os.11089.1.S1_at

Description gb:AK066056.1
DB_XREF= gi:32976074
TID=Os.11089.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052F01, full insert sequence.
FL= gb:AK066056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4903011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein
LOC_Os06g49010Os.11215.1.S1_a_at10/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49010OsAffx.2442.1.S1_x_at1/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11089.1.S1_at--787--7751Chr06:29715255..29715279 (25 bp)
GGTGAAAGGCTATCTGGACATTCCA
LOC_Os06g49030
Os.11089.1.S1_at--787--5111Chr06:29715481..29715505 (25 bp)
GCAAATAAGTTTTACCGACATCAAG
LOC_Os06g49030
Os.11089.1.S1_at--482--5671Chr06:29715497..29715521 (25 bp)
GACATCAAGGACCTCTCGTCCGACA
LOC_Os06g49030
Os.11089.1.S1_at--596--9511Chr06:29715510..29715534 (25 bp)
TCTCGTCCGACAACAAGGCACAAAT
LOC_Os06g49030
Os.11089.1.S1_at--993--7931Chr06:29715541..29715565 (25 bp)
GGATTTGAAGTCGTTTCTTGCACCG
LOC_Os06g49030
Os.11089.1.S1_at--574--10551Chr06:29715555..29715579 (25 bp)
TTCTTGCACCGATCCGGGAGAAACT
LOC_Os06g49030
Os.11089.1.S1_at--838--1971Chr06:29715577..29715601 (25 bp)
ACTGCGCAAGTTTGAAGAAGAGCTC
LOC_Os06g49030
Os.11089.1.S1_at--238--6471Chr06:29715609..29715633 (25 bp)
GATAGCAAAGCTGCAAACTTGGTTG
LOC_Os06g49030
Os.11089.1.S1_at--256--3611Chr06:29715626..29715650 (25 bp)
CTTGGTTGGAAGCATCACGTATCAA
LOC_Os06g49030
Os.11089.1.S1_at--995--4891Chr06:29715660..29715684 (25 bp)
GCTTAATCTATAGCCATTTCACGTA
LOC_Os06g49030
Os.11089.1.S1_at--214--311Chr06:29715669..29715693 (25 bp)
ATAGCCATTTCACGTATCAAAAGAC
LOC_Os06g49030
Target Sequence 
GGTGAAAGGCTATCTGGACATTCCANGAATTTTCATNTGGTGAACTTGAAGACTTAGAGGTGCAAATAAGTTTTACCGAC
ATCAAGGACCTCTCGTCCGACAACAAGGCACAAATCNAGCAAGGATTTGAAGTCGTTTCTTGCACCGATCCGGGAGAAAC
TGCGCAAGTTTGAAGAAGAGCTCAAGGATAGATAGCAAAGCTGCAAACTTGGTTGGAAGCATCACGTATCAAAAGATGAT
GGCTTAATCTATAGCCATTTCACGTATCAAAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis