Browse Element(s) Details


Os.49860.1.S1_at

Description gb:AK110999.1
DB_XREF= gi:32996208
TID=Os.49860.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E09, full insert sequence.
FL= gb:AK110999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4902011/1126S proteasome non-ATPase regulatory subunit 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein
LOC_Os06g49010Os.11215.1.S1_a_at10/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49010OsAffx.2442.1.S1_x_at1/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0010093biological_processspecification of floral organ identity
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49860.1.S1_at--417--4171Chr06:29710838..29710862 (25 bp)
CGCCATCAGCTACCGGATGAAGGAG
LOC_Os06g49020
Os.49860.1.S1_at--758--771Chr06:29710573..29710597 (25 bp)
ATGTCCGCCAACATCGTGCAGACGC
LOC_Os06g49020
Os.49860.1.S1_at--311--5051Chr06:29710556..29710580 (25 bp)
GCAGACGCTCGGCATGATGCTCGAC
LOC_Os06g49020
Os.49860.1.S1_at--60--9431Chr06:29710548..29710572 (25 bp)
TCGGCATGATGCTCGACACCGTCAC
LOC_Os06g49020
Os.49860.1.S1_at--35--2171Chr06:29710533..29710557 (25 bp)
ACACCGTCACCTTCTAGGATTACTA
LOC_Os06g49020
Os.49860.1.S1_at--994--10371Chr06:29710487..29710511 (25 bp)
TTTTCAATTTTGACCGCTGGTAAAT
LOC_Os06g49020
Os.49860.1.S1_at--1075--5811Chr06:29710476..29710500 (25 bp)
GACCGCTGGTAAATTTCTTTTCAAT
LOC_Os06g49020
Os.49860.1.S1_at--690--10331Chr06:29710458..29710482 (25 bp)
TTTCAATTTTGACCTTGCCCAATCG
LOC_Os06g49020
Os.49860.1.S1_at--278--9171Chr06:29710443..29710467 (25 bp)
TGCCCAATCGGCTCTTGAGCTTTAA
LOC_Os06g49020
Os.49860.1.S1_at--1013--8311Chr06:29710434..29710458 (25 bp)
GGCTCTTGAGCTTTAATCTCTTAAG
LOC_Os06g49020
Os.49860.1.S1_at--1047--10051Chr06:29710348..29710372 (25 bp)
TAGTACAATATAAAAGCAGACGCTT
LOC_Os06g49020
Target Sequence 
CGCCATCAGCTACCGGATGAAGGAGGGGGAGGAGCGGATGCTGGCGTGCCTCAGCCGGAGCGGGTGGTCCGACGGTTTCG
CGCTGCGGCGGTTCGGCGCGCACGACGCCGGCAACGAGGCGGCGGTGCGCGGGATGCGGGACCTCGCCGTGGGCTACGGG
GCGCAGGTGAGGGAGGAGGACGAGACGCCGCCGGAGAGGCTCGCCGTGGTGAGGGCGGGCAAGGTGGACGCCAAGGGGAA
GCTGGAGGAGAAGGCCATGGACGCCATGTCCGCCAACATCGTGCAGACGCTCGGCATGATGCTCGACACCGTCACCTTCT
AGGATTACTAGTTTTATTTTTTCGTCTTTTTTTTTCAATTTTGACCGCTGGTAAATTTCTTTTCAATTTTGACCTTGCCC
AATCGGCTCTTGAGCTTTAATCTCTTAAGCAAATATATATGTTCAAGGGATTTTTTTTTCGATAGATGAAATTATTTTTC
TTGTGAAGTATAGTACAATATAAAAGCAGACGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis