Browse Element(s) Details


Os.11196.1.S1_at

Description gb:AU070756
DB_XREF= gi:5038646
DB_XREF=AU070756
CLONE=R10195_1A
TID=Os.11196.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11196 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1285011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12850Os.11196.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12850OsAffx.29166.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12860NANA8+7619859..7621711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.47463.1.S1_x_at6/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.14491.2.S1_x_at5/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12880Os.26886.3.S1_x_at6/118+7637210..7639960transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11196.1.S1_at--784--10591Chr08:7610734..7610758 (25 bp)
TTCTGCCTCTACATGTTTGCACAAA
LOC_Os08g12850
Os.11196.1.S1_at--894--10371Chr08:7610700..7610724 (25 bp)
TTTTCGATCAGCTCCCTTCTTGGGT
LOC_Os08g12850
Os.11196.1.S1_at--150--5371Chr08:7610667..7610691 (25 bp)
GAAGAGATTCTCTTGGCGGCTCTCA
LOC_Os08g12850
Os.11196.1.S1_at--719--8351Chr08:7610653..7610677 (25 bp)
GGCGGCTCTCAGGATACAACATGAT
LOC_Os08g12850
Os.11196.1.S1_at--632--3391Chr08:7610619..7610643 (25 bp)
CAGCTAGTTTGTGTGTACGATCGAC
LOC_Os08g12850
Os.11196.1.S1_at--528--6991Chr08:7610605..7610629 (25 bp)
GTACGATCGACTCTGCAGGTCAATA
LOC_Os08g12850
Os.11196.1.S1_at--46--491Chr08:7610553..7610577 (25 bp)
ATCTGTTGCTTCTTTCACGGCTCAC
LOC_Os08g12850
Os.11196.1.S1_at--995--8311Chr08:7610535..7610559 (25 bp)
GGCTCACCTCTGCATTGCAGTTGTT
LOC_Os08g12850
Os.11196.1.S1_at--866--5031Chr08:7610519..7610543 (25 bp)
GCAGTTGTTCATGGTGTCCTGTAAC
LOC_Os08g12850
Os.11196.1.S1_at--405--7451Chr08:7610506..7610530 (25 bp)
GTGTCCTGTAACAGCAGCATCACCT
LOC_Os08g12850
Os.11196.1.S1_at--661--391Chr08:7610488..7610512 (25 bp)
ATCACCTCTGTATATCATATGCTGT
LOC_Os08g12850
Target Sequence 
TTCTGCCTCTACATGTTTGCACAAAGCACTGATCTTTTCGATCAGCTCCCTTCTTGGGTTCCCGTAGGAAGAGATTCTCT
TGGCGGCTCTCAGGATACAACATGATTCTGTACATCAGCTAGTTTGTGTGTACGATCGACTCTGCAGGTCAATATATAGC
TTCTTGAACTGTATGTATAGCATCTGTTGCTTCTTTCACGGCTCACCTCTGCATTGCAGTTGTTCATGGTGTCCTGTAAC
AGCAGCATCACCTCTGTATATCATATGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis