Browse Element(s) Details


OsAffx.29165.1.S1_at

Description tigr:9636.m01262
TID=OsAffx.29165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY125519 At2g22230T26C19.11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1284010/11beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12850Os.11196.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12850OsAffx.29166.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12860NANA8+7619859..7621711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.47463.1.S1_x_at6/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.14491.2.S1_x_at5/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0019171molecular_function3-hydroxyacyl-[acyl-carrier protein] dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29165.1.S1_at--564--6211Chr08:7608272..7608294 (23 bp)
GAGGCGCTCCCCATCGAGAAAAGGT
LOC_Os08g12840
OsAffx.29165.1.S1_at--548--8391Chr08:7608272..7608292 (21 bp)
GGCGCTCCCCATCGAGAAAAGGTTC
LOC_Os08g12840
OsAffx.29165.1.S1_at--772--4311Chr08:7608130..7608154 (25 bp)
CCTTCCCGAGCGTCATGGACATCAA
LOC_Os08g12840
OsAffx.29165.1.S1_at--1112--4071Chr08:7608124..7608148 (25 bp)
CGAGCGTCATGGACATCAACCAGAT
LOC_Os08g12840
OsAffx.29165.1.S1_at--494--4651Chr08:7608121..7608145 (25 bp)
GCGTCATGGACATCAACCAGATCCG
LOC_Os08g12840
OsAffx.29165.1.S1_at--596--3551Chr08:7608111..7608135 (25 bp)
CATCAACCAGATCCGCGAGATCCTG
LOC_Os08g12840
OsAffx.29165.1.S1_at--647--1291NONE
AGATCCTGCCCCACAGGTTTCCATT
NONE
OsAffx.29165.1.S1_at--1103--4271Chr08:7607346..7607370 (25 bp)
CCTCCTGGTTGATAGAGTTATTGAG
LOC_Os08g12840
OsAffx.29165.1.S1_at--466--6731Chr08:7607028..7607249 (25 bp)
GTTCTCATGGTTGAGTCTGAGCATA
LOC_Os08g12840
OsAffx.29165.1.S1_at--920--8571Chr08:7607021..7607242 (25 bp)
TGGTTGAGTCTGAGCATATTGATAC
LOC_Os08g12840
OsAffx.29165.1.S1_at--1059--6091Chr08:7607016..7607039 (24 bp)
GAGTCTGAGCATATTGATACTCAAT
LOC_Os08g12840
Target Sequence 
GAGGCGCTCCCCATCGAGAAAAGGTTCCCTCCCTTCCCGAGCGTCATGGACATCAACCAGATCCGCGAGATCCTGCCCCA
CAGGTTTCCATTCCTCCTGGTTGATAGAGTTATTGAGTACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGA
TAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGTCTGAGCATATT
GATACTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis