Browse Element(s) Details


Os.54847.1.S1_at

Description gb:AK106897.1
DB_XREF= gi:32992106
TID=Os.54847.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H02, full insert sequence.
FL= gb:AK106897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1280011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54847.1.S1_at--538--2211Chr08:7581576..7581600 (25 bp)
ACAAGCCTCGGGTACAAGACGTCGT
LOC_Os08g12800
Os.54847.1.S1_at--385--2491Chr08:7581642..7581666 (25 bp)
AACAGCTACTACCAGGTGAACGACC
LOC_Os08g12800
Os.54847.1.S1_at--1137--7351Chr08:7581657..7581681 (25 bp)
GTGAACGACCAGGACGACCGTGCCT
LOC_Os08g12800
Os.54847.1.S1_at--834--4891Chr08:7581739..7581763 (25 bp)
GCTTCATCATCGAGATTGCGCCCAC
LOC_Os08g12800
Os.54847.1.S1_at--18--7431Chr08:7581828..7581852 (25 bp)
GTGTTCATACACTTGGTGGTGCCCG
LOC_Os08g12800
Os.54847.1.S1_at--380--7291Chr08:7581846..7581870 (25 bp)
GTGCCCGTGTTCTGAATGGCTCCAA
LOC_Os08g12800
Os.54847.1.S1_at--662--2951Chr08:7581860..7581884 (25 bp)
AATGGCTCCAACATCCTTAGCTTAT
LOC_Os08g12800
Os.54847.1.S1_at--624--4312Chr08:7581874..7581898 (25 bp)
CCTTAGCTTATCCTCTTAATCATCA
LOC_Os08g12800
Os.54847.1.S1_at--691--10351Chr08:7581951..7581975 (25 bp)
TTTATCTTGTTTATCGCCTCGCATC
LOC_Os08g12800
Os.54847.1.S1_at--506--2251Chr08:7581984..7582008 (25 bp)
AAATATTATCGGACGTGCTCCCCGC
LOC_Os08g12800
Os.54847.1.S1_at--515--4171Chr08:7582004..7582028 (25 bp)
CCCGCGTACCAATCACAGTAGTTAG
LOC_Os08g12800
Target Sequence 
ACAAGCCTCGGGTACAAGACGTCGTGCGGCGGCCTCGACGCCAAGGGGAACGTGTCGTACGCGTTCAACAGCTACTACCA
GGTGAACGACCAGGACGACCGTGCCTGCGACTTCAAGGGCATCGCCACCACCACCACTGTCGACCCCTCTGCCGGGTCAT
GCCGCTTCATCATCGAGATTGCGCCCACCGCCAACGGCGTCGCCATGGCGGCAACAGTTAGGGTCGCCGGCGTCATGGCT
GCCATCCTCGCCGTGTTCATACACTTGGTGGTGCCCGTGTTCTGAATGGCTCCAACATCCTTAGCTTATCCTCTTAATCA
TCATGTATTTATCTCTTGTTTAATTTAATTTAAACACGAAAAATAGTTGTTTTTGTTTATCTTGTTTATCGCCTCGCATC
CTGCATTCAAATATTATCGGACGTGCTCCCCGCGTACCAATCACAGTAGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis