Browse Element(s) Details


Os.25324.1.A1_at

Description gb:CA760624
DB_XREF= gi:25804663
DB_XREF=BR060006B10F03.ab1
CLONE=BR060006B10F03.ab1
TID=Os.25324.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25324 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567865.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1278011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12730OsAffx.16962.1.S1_at11/118+7533790..7541820Cycloartenol synthase, putative, expressed
LOC_Os08g12740OsAffx.16963.1.S1_at11/118+7542299..7544988NB-ARC domain containing protein, expressed
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25324.1.A1_at--249--2911Chr08:7563007..7563028 (22 bp)
AAGGAAAGACCATCCTTCCAGGGCT
LOC_Os08g12780
Os.25324.1.A1_at--193--8971Chr08:7562663..7562687 (25 bp)
TGAAATGCCAACATAGTTGCCATGG
LOC_Os08g12780
Os.25324.1.A1_at--528--51Chr08:7562638..7562662 (25 bp)
ATTGCAATTTCGGAGGTCGCCCTAA
LOC_Os08g12780
Os.25324.1.A1_at--213--9791Chr08:7562616..7562640 (25 bp)
TAACCAGTGCTTACCCTACAAAAGG
LOC_Os08g12780
Os.25324.1.A1_at--659--7311Chr08:7562545..7562569 (25 bp)
GTGCTGATTACACATATCATCCAGG
LOC_Os08g12780
Os.25324.1.A1_at--1073--9751Chr08:7562491..7562515 (25 bp)
TAATGAGCGATTTTGTCCCAGGATG
LOC_Os08g12780
Os.25324.1.A1_at--557--5431Chr08:7562456..7562480 (25 bp)
GAACCTTCTGTGTTTTCATCTTTTT
LOC_Os08g12780
Os.25324.1.A1_at--368--3751Chr08:7562382..7562406 (25 bp)
CTGCAGTAGGAATTTGCCTTTCCCC
LOC_Os08g12780
Os.25324.1.A1_at--564--9231Chr08:7562349..7562373 (25 bp)
TCCATTGTAGTTCCTTGTGGCATTT
LOC_Os08g12780
Os.25324.1.A1_at--909--6771Chr08:7562319..7562343 (25 bp)
GTTATCAAGGAATTTAGGCCAGTCT
LOC_Os08g12780
Os.25324.1.A1_at--811--10431Chr08:7562283..7562307 (25 bp)
TTAGGTCCAATTTGGTGTGCGGGAT
LOC_Os08g12780
Target Sequence 
AAGGAAAGACCATCCTTCCAGGGCTCACTCGGGGNTAGTGTNTGATTGATGAAATGCCAACATAGTTGCCATGGATTGCA
ATTTCGGAGGTCGCCCTAACCAGTGCTTACCCTACAAAAGGCATACATAACATTNTGTAGTATATATACTCTCCACATAA
AAAAAATGTGCTGATTACACATATCATCCAGGAATATTCAGGNNNNNNNTGATGCNGTATTCACCGATAATGAGCGATTT
TGTCCCAGGATGNTCACATATNGAACCTTCTGTGTTTTCATCTTTTTGTTATGTGAAATTCGAAACAACTATGTATATGT
ATACAAACAGCAGAGGCTGCAGTAGGAATTTGCCTTTCCCCCTTTTTTNTCCATTGTAGTTCCTTGTGGCATTTGTAATG
TTATCAAGGAATTTAGGCCAGTCTAAGAAAATAATTTAGGTCCAATTTGGTGTGCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25324.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis