Browse Element(s) Details


OsAffx.16963.1.S1_at

Description tigr:9636.m01250
TID=OsAffx.16963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1274011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12700NANA8+7519083..7525264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12710NANA8+7526782..7528913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12720NANA8+7531068..7532771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12730OsAffx.16962.1.S1_at11/118+7533790..7541820Cycloartenol synthase, putative, expressed
LOC_Os08g12740OsAffx.16963.1.S1_at11/118+7542299..7544988NB-ARC domain containing protein, expressed
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16963.1.S1_at--499--5691Chr08:7542994..7543018 (25 bp)
GACTTCACTGACATTTCTGTTCTTA
LOC_Os08g12740
OsAffx.16963.1.S1_at--1154--6491Chr08:7542935..7542959 (25 bp)
GATTTGGTAGTCTAACTTCCCTCCG
LOC_Os08g12740
OsAffx.16963.1.S1_at--903--5551Chr08:7542911..7542935 (25 bp)
GAAAGCTCTACATCTTCAACTGTCC
LOC_Os08g12740
OsAffx.16963.1.S1_at--122--2551Chr08:7542854..7542878 (25 bp)
AACTCTCCACACTTCAAACATTATC
LOC_Os08g12740
OsAffx.16963.1.S1_at--513--5431Chr08:7542798..7542822 (25 bp)
GAACCTTCAGAAGCCATGGGTGGCC
LOC_Os08g12740
OsAffx.16963.1.S1_at--284--7591Chr08:7542744..7542768 (25 bp)
GGGCTTCCGAAGCTAGTCTGTTTTC
LOC_Os08g12740
OsAffx.16963.1.S1_at--255--4871Chr08:7542733..7542757 (25 bp)
GCTAGTCTGTTTTCCAGGGAGCTTT
LOC_Os08g12740
OsAffx.16963.1.S1_at--510--1071Chr08:7542718..7542742 (25 bp)
AGGGAGCTTTATTTCTGCTGCTACC
LOC_Os08g12740
OsAffx.16963.1.S1_at--845--3171Chr08:7542610..7542634 (25 bp)
AATTGTGATCAATGGCTGTCCTGAG
LOC_Os08g12740
OsAffx.16963.1.S1_at--845--2751Chr08:7542554..7542578 (25 bp)
AAGACTTCCATCTCATTTCCCATGT
LOC_Os08g12740
OsAffx.16963.1.S1_at--858--5511Chr08:7542496..7542520 (25 bp)
GAAAATTACTCCATCACATCCAGAA
LOC_Os08g12740
Target Sequence 
GACTTCACTGACATTTCTGTTCTTAAATTCATGTGCTGAGTTATCATCATTGACAAATGGATTTGGTAGTCTAACTTCCC
TCCGAAAGCTCTACATCTTCAACTGTCCAAAGTTGGCTACTCTACCCTCGACCATGAATCAACTCTCCACACTTCAAACA
TTATCGATTAATAATTGCCATGAGCTGGATTTGTTGGAACCTTCAGAAGCCATGGGTGGCCTGGCTTGCCTTGATGTGCT
CCAGCTTGTTGGGCTTCCGAAGCTAGTCTGTTTTCCAGGGAGCTTTATTTCTGCTGCTACCTCTCTTCAATATTTTGGTA
TTGGAAATTGCAATGGATTAATGAAACTGCCAGATTTCATTCAAAGTTTCACTTCTCTCAAGAAAATTGTGATCAATGGC
TGTCCTGAGTTGAGCAGAAGATGTGCTGTTAAATCAGGGGAAGACTTCCATCTCATTTCCCATGTTCCCCAAATAACAAT
TGACAAGAAAACATATCGGAAAATTACTCCATCACATCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis