Browse Element(s) Details


Os.7188.1.S1_at

Description gb:AK101331.1
DB_XREF= gi:32986540
TID=Os.7188.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034H04, full insert sequence.
FL= gb:AK068253.1 gb:AK101331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1276011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12710NANA8+7526782..7528913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12720NANA8+7531068..7532771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12730OsAffx.16962.1.S1_at11/118+7533790..7541820Cycloartenol synthase, putative, expressed
LOC_Os08g12740OsAffx.16963.1.S1_at11/118+7542299..7544988NB-ARC domain containing protein, expressed
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7188.1.S1_at--169--5951Chr08:7553281..7553305 (25 bp)
GAGCACGAACGCTAGCCCTGTGGAG
LOC_Os08g12760
Os.7188.1.S1_at--737--6091Chr08:7553259..7553283 (25 bp)
GAGTAAAGCAGTCGATTTTCTCCCC
LOC_Os08g12760
Os.7188.1.S1_at--813--131Chr08:7553117..7553141 (25 bp)
ATTATAGGCTTTGTTTCACCTCCCT
LOC_Os08g12760
Os.7188.1.S1_at--785--111Chr08:7553060..7553084 (25 bp)
ATTCTTGCTGTCAATCTTCTTTCCT
LOC_Os08g12760
Os.7188.1.S1_at--1019--10291Chr08:7553041..7553065 (25 bp)
TTTCCTGTCTCAATGTGTTCCCTTT
LOC_Os08g12760
Os.7188.1.S1_at--258--4891Chr08:7553015..7553039 (25 bp)
GCTTTTACTTGTGTTGCGTCATGAA
LOC_Os08g12760
Os.7188.1.S1_at--718--7851Chr08:7552933..7552957 (25 bp)
GGTAGCTTTCCAGTCTCATGTCTCT
LOC_Os08g12760
Os.7188.1.S1_at--402--7911Chr08:7552906..7552930 (25 bp)
GGTTCCATCCTTTGTATATTTGCAG
LOC_Os08g12760
Os.7188.1.S1_at--765--1371Chr08:7552883..7552907 (25 bp)
AGAGCGCCATTCTTTTCTTGTGAAC
LOC_Os08g12760
Os.7188.1.S1_at--684--10011Chr08:7552822..7552846 (25 bp)
TAGCAAAGCTCCTTTGGTCACGCGG
LOC_Os08g12760
Os.7188.1.S1_at--239--7831Chr08:7552807..7552831 (25 bp)
GGTCACGCGGTACTTCATGACTGAA
LOC_Os08g12760
Target Sequence 
GAGCACGAACGCTAGCCCTGTGGAGTAAAGCAGTCGATTTTCTCCCCCATATCATTTACTAATTTGGAGCAGCAGTTGGA
TCATATGATNCNTCTTATGGAGGTGAGAAGGGTTAAAAGAGCAGGTTGGTTATGTCAGGTGTTGCTGCTGCTTCAGTTGT
ACAACATTATAGGCTTTGTTTCACCTCCCTTTAGGTTATAATTCCAATTTCATAGTTCCGAAATTCTTGCTGTCAATCTT
CTTTCCTGTCTCAATGTGTTCCCTTTCGCTTTTACTTGTGTTGCGTCATGAATGCTGTTCAATGTGAGTGGTGGTGTTTA
GCCATAAGAAGCTGCATAATTATGCTGCCGGTAGCTTTCCAGTCTCATGTCTCTCTGGTTCCATCCTTTGTATATTTGCA
GAGCGCCATTCTTTTCTTGTGAACTTGGAGCTTCTTAAGCTCTCATGTAGCACAATTCTGTAGCAAAGCTCCTTTGGTCA
CGCGGTACTTCATGACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis