Browse Element(s) Details


OsAffx.24242.4.S1_at

Description tigr:9636.m01255
TID=OsAffx.24242.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1279011/11hypothetical protein
LOC_Os02g258501/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24242.4.S1_at--892--1111Chr08:7571099..7571123 (25 bp)
AGTCTTCCACCCCAATTAAGAGTGC
LOC_Os08g12790
OsAffx.24242.4.S1_at--837--7131Chr08:7571100..7571124 (25 bp)
GTCTTCCACCCCAATTAAGAGTGCT
LOC_Os08g12790
OsAffx.24242.4.S1_at--1027--9551Chr08:7571101..7571125 (25 bp)
TCTTCCACCCCAATTAAGAGTGCTG
LOC_Os08g12790
OsAffx.24242.4.S1_at--714--10671Chr08:7571103..7571127 (25 bp)
TTCCACCCCAATTAAGAGTGCTGGT
LOC_Os08g12790
OsAffx.24242.4.S1_at--674--3351Chr08:7571106..7571130 (25 bp)
CACCCCAATTAAGAGTGCTGGTGAA
LOC_Os08g12790
OsAffx.24242.4.S1_at--1034--3592Chr08:7571423..7571447 (25 bp)
CATTGGAACCAGATGTGAGAACATA
LOC_Os08g12790
OsAffx.24242.4.S1_at--218--8833Chr08:7571450..7571474 (25 bp)
TGTTGGCTATGAGGACACAAATTGC
LOC_Os08g12790
OsAffx.24242.4.S1_at--234--10873Chr08:7571452..7571476 (25 bp)
TTGGCTATGAGGACACAAATTGCAG
LOC_Os08g12790
OsAffx.24242.4.S1_at--746--3693Chr08:7571456..7571480 (25 bp)
CTATGAGGACACAAATTGCAGCTTC
LOC_Os08g12790
OsAffx.24242.4.S1_at--956--693Chr08:7571458..7571482 (25 bp)
ATGAGGACACAAATTGCAGCTTCAA
LOC_Os08g12790
OsAffx.24242.4.S1_at--197--6194Chr08:7571460..7571484 (25 bp)
GAGGACACAAATTGCAGCTTCAAAG
LOC_Os08g12790
Target Sequence 
AGTCTTCCACCCCAATTAAGAGTGCTGGTGAAGAAGATGAAGAAGGAGATGATGCTAGGAAGAGTACAACTCCTGATTTA
TTACAGCCAAGTGCTAAAAAAAGACCAATGGGTAGGAAGCAAGCAAAGGAGAAGATGAAGAATGGAGAAGATGGACCATA
CAAGGAGGCGATGAAAGATTTGCTTGACGCCAAAGAGAAAGAAGCTAAAGTGAAAGAAGAGAGATGGAAGGAAACTAAGG
AGATTCAAGAGCACAAGCTCTTATTTGCTGAGCGTAAGTTAGTGTGGGATCAAGAACAGAAGATCATGTTTTGTGATGTT
TCCACATTGGAACCAGATGTGAGAACATATGTGTTGGCTATGAGGACACAAATTGCAGCTTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24242.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis