Browse Element(s) Details


OsAffx.5796.1.S1_at

Description tigr:9636.m01257
TID=OsAffx.5796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g128109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5796.1.S1_at--48--6613Chr11:511704..511728 (25 bp)
GATTGGATTGGTGACTCCCAGCGGA
NONE
OsAffx.5796.1.S1_at--562--8572Chr11:511701..511725 (25 bp)
TGGATTGGTGACTCCCAGCGGAAGC
NONE
OsAffx.5796.1.S1_at--953--10831Chr08:7583828..7583852 (25 bp)
TTGGTGACTCCCAGCGGAAGCGGAA
LOC_Os08g12810
OsAffx.5796.1.S1_at--1150--1971Chr08:7583822..7583846 (25 bp)
ACTCCCAGCGGAAGCGGAACCGCAA
LOC_Os08g12810
OsAffx.5796.1.S1_at--1018--8171Chr08:7583807..7583831 (25 bp)
GGAACCGCAAGCCAGGCCGACTGTT
LOC_Os08g12810
OsAffx.5796.1.S1_at--435--3631Chr08:7583742..7583766 (25 bp)
CTTCGCGGCCGTGAAACCGACGGAG
LOC_Os08g12810
OsAffx.5796.1.S1_at--975--3932Chr01:22437784..22437808 (25 bp)
CGGCGGCGAGAAATGAACTCCGGCG
NONE
OsAffx.5796.1.S1_at--769--8154Chr01:22437812..22437836 (25 bp)
GGAAAAACTCGAAGCACTTATCGGT
NONE
OsAffx.5796.1.S1_at--421--2553Chr01:22437817..22437836 (20 bp)
AACTCGAAGCACTTATCGGTATTGA
NONE
OsAffx.5796.1.S1_at--115--2731NONE
AAGCACTTATCGGTATTGACGGTCA
NONE
OsAffx.5796.1.S1_at--824--3311NONE
CACTTATCGGTATTGACGGTCAAAT
NONE
Target Sequence 
GATTGGATTGGTGACTCCCAGCGGAAGCGGAACCGCAAGCCAGGCCGACTGTTCTTCCTCCTCCCGCTCTCCTCCCGCCC
TCCGCGGCTTCGCCTTCGCGGCCGTGAAACCGACGGAGGCTTCGGGATGCGGCCGCGGCGGCGAGAAATGAACTCCGGCG
AGGGGAAAAACTCGAAGCACTTATCGGTATTGACGGTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis