Browse Element(s) Details


Os.15239.1.S1_at

Description gb:AK121754.1
DB_XREF= gi:37991377
TID=Os.15239.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN2a mRNA for 26S proteasome regulatory particle non-ATPase subunit2a, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088B02, full insert sequence.
FL= gb:AK060950.1 gb:AK121754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1282011/11Proteasome/cyclosome repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os08g12810OsAffx.5796.1.S1_at9/118+7582705..7583889hypothetical protein
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12850Os.11196.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12850OsAffx.29166.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15239.1.S1_at--606--9891Chr08:7589959..7590106 (25 bp)
TACTTCAATGCAGGTCGATGGTGTG
LOC_Os08g12820
Os.15239.1.S1_at--129--5271Chr08:7590112..7590136 (25 bp)
GAAGAAAGCCCCTGAGCCCGAACCG
LOC_Os08g12820
Os.15239.1.S1_at--762--7231Chr08:7590170..7590194 (25 bp)
GTCCCGGCCCAGGAGAAGTTCATAA
LOC_Os08g12820
Os.15239.1.S1_at--664--2811Chr08:7590185..7590209 (25 bp)
AAGTTCATAAAATTCCTGGAGGGCG
LOC_Os08g12820
Os.15239.1.S1_at--565--5391Chr08:7590226..7590250 (25 bp)
GAAGCTGGCGCCCTCCGGATTTGTC
LOC_Os08g12820
Os.15239.1.S1_at--201--211Chr08:7590244..7590268 (25 bp)
ATTTGTCCTCCTACGGGACCTCAAG
LOC_Os08g12820
Os.15239.1.S1_at--436--8031Chr08:7590259..7590283 (25 bp)
GGACCTCAAGCCCACCGAGACGGAG
LOC_Os08g12820
Os.15239.1.S1_at--974--5731Chr08:7590277..7590301 (25 bp)
GACGGAGGAACTAGTCCTCACCGAC
LOC_Os08g12820
Os.15239.1.S1_at--1129--4351Chr08:7590400..7590424 (25 bp)
CCAGCCATTTGAGTACACCTCGTGA
LOC_Os08g12820
Os.15239.1.S1_at--200--9431Chr08:7590419..7590443 (25 bp)
TCGTGATCCCTTGATGATCCCAGGG
LOC_Os08g12820
Os.15239.1.S1_at--619--6371Chr08:7590434..7590458 (25 bp)
GATCCCAGGGCTAAACACTTGTACT
LOC_Os08g12820
Target Sequence 
TACTTCAATGCAGGTCGATGGTGTGGCGGAGAAGAAAGCCCCTGAGCCCGAACCGACCTTCCAGATCCTGACTAACCCGG
CCCGGGTTGTCCCGGCCCAGGAGAAGTTCATAAAATTCCTGGAGGGCGGCAGGTACGAGCCTGTGAAGCTGGCGCCCTCC
GGATTTGTCCTCCTACGGGACCTCAAGCCCACCGAGACGGAGGAACTAGTCCTCACCGACGCCCCGGCAANTCAGGCGAC
GAACGCCGCAGCCGCCACCGCTGGCCAGCAAGGCTCAGGCGCCGCCGCCATGGCCGTCGACGAGGAGCCCCTGCCACCCC
AGCCATTTGAGTACACCTCGTGATCCCTTGATGATCCCAGGGCTAAACACTTGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis