Browse Element(s) Details


OsAffx.16962.1.S1_at

Description tigr:9636.m01249
TID=OsAffx.16962.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to oxidosqualene cyclase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1273011/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12690NANA8+7515308..7516878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12700NANA8+7519083..7525264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12710NANA8+7526782..7528913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12720NANA8+7531068..7532771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12730OsAffx.16962.1.S1_at11/118+7533790..7541820Cycloartenol synthase, putative, expressed
LOC_Os08g12740OsAffx.16963.1.S1_at11/118+7542299..7544988NB-ARC domain containing protein, expressed
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16962.1.S1_at--615--9011Chr08:7540070..7540094 (25 bp)
TGCAATAGAGGGTCTGTCAGCCGTG
LOC_Os08g12730
OsAffx.16962.1.S1_at--493--1111Chr08:7540099..7540123 (25 bp)
AGTGTTATGATGACAGCACCTGCAT
LOC_Os08g12730
OsAffx.16962.1.S1_at--927--1491Chr08:7540113..7540137 (25 bp)
AGCACCTGCATTCGGAAAGCCTGTA
LOC_Os08g12730
OsAffx.16962.1.S1_at--217--2371Chr08:7540128..7540152 (25 bp)
AAAGCCTGTAAGTTTCTGTTATCAA
LOC_Os08g12730
OsAffx.16962.1.S1_at--271--3851Chr08:7540706..7540730 (25 bp)
CTGCATGGGCAATGTTGGCACTCAT
LOC_Os08g12730
OsAffx.16962.1.S1_at--123--9051Chr08:7540978..7541002 (25 bp)
TGCAGCTCAGTGATGGTGACTTTCC
LOC_Os08g12730
OsAffx.16962.1.S1_at--864--6831Chr08:7541429..7541453 (25 bp)
GTTTCTTGAAAAATGGCCCCTTGTG
LOC_Os08g12730
OsAffx.16962.1.S1_at--274--4211Chr08:7541445..7541469 (25 bp)
CCCCTTGTGTTATATGGCTTATCGC
LOC_Os08g12730
OsAffx.16962.1.S1_at--61--8311Chr08:7541460..7541484 (25 bp)
GGCTTATCGCAATATATTCCCAATA
LOC_Os08g12730
OsAffx.16962.1.S1_at--1125--5471Chr08:7541520..7541544 (25 bp)
GAACTATCAGACCTCTAGCATCAAG
LOC_Os08g12730
OsAffx.16962.1.S1_at--183--3111Chr08:7541551..7541575 (25 bp)
AATATAGCTCCATCTGCTGGCAATG
LOC_Os08g12730
Target Sequence 
TGCAATAGAGGGTCTGTCAGCCGTGGGGCAGTGTTATGATGACAGCACCTGCATTCGGAAAGCCTGTAAGTTTCTGTTAT
CAAAGCAACTAACAAATGGTGGATGGGGGGAGAGTCATCTTTCATCCAGAACCAAGGCATACACAAACCTAGATGGGGAG
AAATCACATATAGTCAATACTGCATGGGCAATGTTGGCACTCATGAAAGCTGGACAGGTAGAGAGAGACCCCGCTCCTCT
GCACAAAGCAGCAAGACTTATCATGAGCATGCAGCTCAGTGATGGTGACTTTCCACAAGAGGAAATGATCGGAAGTTTCT
TGAAAAATGGCCCCTTGTGTTATATGGCTTATCGCAATATATTCCCAATATGGGCTCTTGGAGAGTATCAGAAATTAGTA
TTTCAGAACTATCAGACCTCTAGCATCAAGCAAACAAATATAGCTCCATCTGCTGGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis