Browse Element(s) Details


Os.11202.1.S1_at

Description gb:AK064768.1
DB_XREF= gi:32974786
TID=Os.11202.1
CNT=52
FEA=FLmRNA
TIER=FL+Stack
STK=23
UG=Os.11202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A05, full insert sequence.
FL= gb:AK064768.1 gb:AK061859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0610011/11Caffeic acid 3-O-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06070Os.48069.1.S1_at10/118+3306618..3311692hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g06090Os.55469.1.S1_s_at11/118+3320015..3321237Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06100Os.11202.1.S1_at11/118+3331409..3334574Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os08g06100Os.22368.1.S1_at1/118+3331409..3334574Caffeic acid 3-O-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11202.1.S1_at--93--9011Chr08:3331973..3331997 (25 bp)
TGAAGTGGATCCTCCACGACTGGAG
LOC_Os08g06100
Os.11202.1.S1_at--263--1991Chr08:3331940..3331964 (25 bp)
ACTGCGCGCGGCTGCTCAAGAACTG
LOC_Os08g06100
Os.11202.1.S1_at--769--1431Chr08:3331922..3331946 (25 bp)
AGAACTGCTACGACGCGCTGCCGGA
LOC_Os08g06100
Os.11202.1.S1_at--839--7711Chr08:3331829..3331853 (25 bp)
GGGTGTTCCACGTCGACATGATCAT
LOC_Os08g06100
Os.11202.1.S1_at--956--7551Chr08:3331694..3331718 (25 bp)
GGGCCATCGAGTTCACCAAGTAGGT
LOC_Os08g06100
Os.11202.1.S1_at--397--1051Chr08:3331673..3331697 (25 bp)
AGGTGATTGGTGATCGATCGCCATT
LOC_Os08g06100
Os.11202.1.S1_at--367--4031Chr08:3331606..3331630 (25 bp)
CGTACTTCTTGTTCTTCATCCAAAA
LOC_Os08g06100
Os.11202.1.S1_at--423--7071Chr08:3331575..3331599 (25 bp)
GTAATCATGTCGTTTGCTGCTGGCT
LOC_Os08g06100
Os.11202.1.S1_at--383--4771Chr08:3331541..3331565 (25 bp)
GCTGCTTGTGTTGTACTTTTGATGT
LOC_Os08g06100
Os.11202.1.S1_at--862--3171Chr08:3331515..3331539 (25 bp)
CAATTCCGGTGATTCTGAGTTCTAA
LOC_Os08g06100
Os.11202.1.S1_at--585--831Chr08:3331491..3331515 (25 bp)
ATGGATGTAACCTGTCTGCTATTAT
LOC_Os08g06100
Target Sequence 
TGAAGTGGATCCTCCACGACTGGAGCGACGAGCACTGCGCGCGGCTGCTCAAGAACTGCTACGACGCGCTGCCGGAGCAC
GGGAAGGTGGTGGTGGTGGAGTGCGTGCTGCCGGAGAGCTCCGACGCGACGGCGAGGGAGCAGGGGGTGTTCCACGTCGA
CATGATCATGCTCGCCCACAACCCCGGCGGCAAGGAGAGGTACGAGAGGGAGTTCAGGGAGCTCGCCCGCGCCGCCGGAT
TCACCGGCTTCAAGGCCACCTACATCTACGCCAACGCCTGGGCCATCGAGTTCACCAAGTAGGTGATTGGTGATCGATCG
CCATTGTTGAGCTCGATCAAGGTGTTCGACCATCGTCTTCTTCTTCTCGTACTTCTTGTTCTTCATCCAAAAGCGTGGGT
AATCATGTCGTTTGCTGCTGGCTGATGCTGCTGCTGCTTGTGTTGTACTTTTGATGTTCAATTCCGGTGATTCTGAGTTC
TAATGGATGTAACCTGTCTGCTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis