Browse Element(s) Details


Os.48069.1.S1_at

Description gb:AK106701.1
DB_XREF= gi:32991910
TID=Os.48069.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E03, full insert sequence.
FL= gb:AK106701.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0607010/11hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g401001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06020Os.22692.1.S1_at11/118+3278752..3283530VAP27, putative, expressed
LOC_Os08g06040Os.11517.1.S1_at10/118+3286787..328954560S ribosomal protein L34, putative, expressed
LOC_Os08g06050Os.18022.2.S1_x_at11/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.1.S1_at10/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.2.S1_at8/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060OsAffx.29059.1.S1_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060OsAffx.29059.1.S1_s_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06070Os.48069.1.S1_at10/118+3306618..3311692hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g06090Os.55469.1.S1_s_at11/118+3320015..3321237Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06100Os.11202.1.S1_at11/118+3331409..3334574Caffeic acid 3-O-methyltransferase, putative, expressed
LOC_Os08g06100Os.22368.1.S1_at1/118+3331409..3334574Caffeic acid 3-O-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0016571biological_processhistone methylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48069.1.S1_at--528--10111Chr08:3307106..3307130 (25 bp)
TATGTGCTGTGGTGCCTTTATAAGT
LOC_Os08g06070
Os.48069.1.S1_at--337--8271Chr08:3306994..3307018 (25 bp)
GGCAGTGTAACTGGACCTAAAGACT
LOC_Os08g06070
Os.48069.1.S1_at--1153--2751Chr08:3306975..3306999 (25 bp)
AAGACTTTGGTCTCAGTAGTGATGG
LOC_Os08g06070
Os.48069.1.S1_at--986--1011Chr08:3306947..3306971 (25 bp)
AGGTCTCACCATCATTGTAAAGAAG
LOC_Os08g06070
Os.48069.1.S1_at--577--8831Chr08:3306891..3306915 (25 bp)
TGATATAGACCACCATTTTGCATGT
LOC_Os08g06070
Os.48069.1.S1_at--1149--4991Chr08:3306872..3306896 (25 bp)
GCATGTGTTTTTCGTTTCTCTCAAT
LOC_Os08g06070
Os.48069.1.S1_at--533--131NONE
ATTAAGGTTAGGACACTGGGCAGCT
NONE
Os.48069.1.S1_at--10--8791Chr08:3306798..3306822 (25 bp)
TGTTTTTGCTAGACATTTCTCCTCC
LOC_Os08g06070
Os.48069.1.S1_at--37--10311Chr08:3306783..3306807 (25 bp)
TTTCTCCTCCAGTCGACAGGATGAT
LOC_Os08g06070
Os.48069.1.S1_at--477--711Chr08:3306763..3306787 (25 bp)
ATGATCCTCGTTGGAGGGCGATGTA
LOC_Os08g06070
Os.48069.1.S1_at--208--7752Chr08:3306647..3306671 (25 bp)
GGTGTCACTGTGTCAATTGTCAAAT
LOC_Os08g06070
Target Sequence 
TATGTGCTGTGGTGCCTTTATAAGTGGTTATAGGGTGCAGGGTGGACGAGAAAACATNCCTTGGTGCTTCTGGGCAAGAA
CTAAATTTTGAAGTGCAGAGTATGCAAAACAAGGCAGTGTAACTGGACCTAAAGACTTTGGTCTCAGTAGTGATGGTGGA
GGTCTCACCATCATTGTAAAGAAGTCTTGGGGTCATTCTCANCTATTTGTTTTGATGATATAGACCACCATTTTGCATGT
GTTTTTCGTTTCTCTCAATTTGATTGTGTAAGTACAACAATTTATTAAGGTTAGGACACTGGGCAGCTTGTTTTTGCTAG
ACATTTCTCCTCCAGTCGACAGGATGATCCTCGTTGGAGGGCGATGTATTTATGTACTAGGAGTGCTAATGAGCATCTGT
TGAAGATCAAGAGCAGTGTTACAGGCAGAGTAAATTGTGGTTTTGCAAATGGAAATTGTGGTGTCACTGTGTCAATTGTC
AAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis