Browse Element(s) Details


Os.11517.1.S1_at

Description gb:AK103424.1
DB_XREF= gi:32988633
TID=Os.11517.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128K17, full insert sequence.
FL= gb:AK103424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0604010/1160S ribosomal protein L34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06000NANA8+3264348..3265051hypothetical protein
LOC_Os08g06010Os.11885.1.S1_at11/118+3274761..3278148Glycerol 3-phosphate permease, putative, expressed
LOC_Os08g06020Os.22692.1.S1_at11/118+3278752..3283530VAP27, putative, expressed
LOC_Os08g06040Os.11517.1.S1_at10/118+3286787..328954560S ribosomal protein L34, putative, expressed
LOC_Os08g06050Os.18022.2.S1_x_at11/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.1.S1_at10/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.2.S1_at8/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060OsAffx.29059.1.S1_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060OsAffx.29059.1.S1_s_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06070Os.48069.1.S1_at10/118+3306618..3311692hydroxyproline-rich glycoprotein family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11517.1.S1_at--383--5411Chr08:3286884..3286908 (25 bp)
GAAGCGGCACAGCTACGCCACGAAA
LOC_Os08g06040
Os.11517.1.S1_at--7--6371NONE
GATCCAAGGAATTCCACACCTGAGA
NONE
Os.11517.1.S1_at--256--2171Chr08:3289046..3289070 (25 bp)
ACACCTGAGACCTGCTGAGTACAAG
LOC_Os08g06040
Os.11517.1.S1_at--8--2931Chr08:3289085..3289109 (25 bp)
AAGGAATCGCAGGACCGTGAACCGT
LOC_Os08g06040
Os.11517.1.S1_at--798--5431Chr08:3289103..3289127 (25 bp)
GAACCGTCCTTACGGTGGTGTCCTG
LOC_Os08g06040
Os.11517.1.S1_at--54--7471Chr08:3289120..3289144 (25 bp)
GTGTCCTGTCTGGTACTGCAGTCAG
LOC_Os08g06040
Os.11517.1.S1_at--1025--8131Chr08:3289398..3289422 (25 bp)
GGAAATCCCGTTTCCTAGTGCTGCT
LOC_Os08g06040
Os.11517.1.S1_at--1074--10051Chr08:3289413..3289437 (25 bp)
TAGTGCTGCTAGTATGTGAGATCAA
LOC_Os08g06040
Os.11517.1.S1_at--1147--5871Chr08:3289461..3289485 (25 bp)
GAGCGCTAGTTCTCTAGAGTACTAC
LOC_Os08g06040
Os.11517.1.S1_at--583--6091Chr08:3289477..3289501 (25 bp)
GAGTACTACTACAACCTTGTGTGGA
LOC_Os08g06040
Os.11517.1.S1_at--974--2631Chr08:3289489..3289513 (25 bp)
AACCTTGTGTGGATCCTTTGATGCA
LOC_Os08g06040
Target Sequence 
GAAGCGGCACAGCTACGCCACGAAATCCAACCAGACCCGCGTCGTCAAGACCCCCGGTGGGAGGCTTGTGTACCAGTACA
CCAAGAAGCGGGCGAGCGGGCCGAAATGCCCAGTCACCGGGAAGAAGATCCAAGGAATTCCACACCTGAGACCTGCTGAG
TACAAGAGGTCCAGATTGTCAAGGAATCGCAGGACCGTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAGTCAG
AGAGAGGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACA
AGTCAGCNNNTAAATGATTGCAAGATAGAGACATTGCCGCGATGTTTAAGCNTCTCCAAATTTGTTTTTAAGCAATCAAG
AGAATTTTTCTTCTGGATTTGGGGGAAATCCCGTTTCCTAGTGCTGCTAGTATGTGAGATCAAATCGACATGATTGTTTA
AATTTTGAGCGCTAGTTCTCTAGAGTACTACTACAACCTTGTGTGGATCCTTTGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis