Browse Element(s) Details


Os.11885.1.S1_at

Description gb:AK121377.1
DB_XREF= gi:37991000
TID=Os.11885.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127F09, full insert sequence.
FL= gb:AK121377.1 gb:AK063143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0601011/11Glycerol 3-phosphate permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05990Os.40855.5.S1_x_at10/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_at9/118+3247833..3250578hypothetical protein
LOC_Os08g05990Os.40360.1.S1_x_at8/118+3247833..3250578hypothetical protein
LOC_Os08g06000NANA8+3264348..3265051hypothetical protein
LOC_Os08g06010Os.11885.1.S1_at11/118+3274761..3278148Glycerol 3-phosphate permease, putative, expressed
LOC_Os08g06020Os.22692.1.S1_at11/118+3278752..3283530VAP27, putative, expressed
LOC_Os08g06040Os.11517.1.S1_at10/118+3286787..328954560S ribosomal protein L34, putative, expressed
LOC_Os08g06050Os.18022.2.S1_x_at11/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.1.S1_at10/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050Os.18022.2.S1_at8/118+3294695..3297913Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060OsAffx.29059.1.S1_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060OsAffx.29059.1.S1_s_at11/118+3301253..3304155Mitogen-activated protein kinase homolog MMK2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0008643biological_processcarbohydrate transport
GO:0015794biological_processglycerol-3-phosphate transport
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015169molecular_functionglycerol-3-phosphate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11885.1.S1_at--565--771Chr08:3277584..3277608 (25 bp)
ATGTCGCCGATGCTCAAGGTACCTA
LOC_Os08g06010
Os.11885.1.S1_at--523--9771Chr08:3277630..3277654 (25 bp)
TAAGTAAGATCTAGTCGCACCCCAA
LOC_Os08g06010
Os.11885.1.S1_at--229--6551Chr08:3277668..3277692 (25 bp)
GATTAGATTCTCGTAGCTCCAAAGC
LOC_Os08g06010
Os.11885.1.S1_at--441--10231Chr08:3277717..3277741 (25 bp)
TATTGCTTCCTGCACATGTCTTGAT
LOC_Os08g06010
Os.11885.1.S1_at--216--771Chr08:3277732..3277756 (25 bp)
ATGTCTTGATCACCTCTGGTTTGAG
LOC_Os08g06010
Os.11885.1.S1_at--985--2251Chr08:3277900..3277924 (25 bp)
AAATATAGGCTCAGGCCGCCTTGTA
LOC_Os08g06010
Os.11885.1.S1_at--638--4531Chr08:3277914..3277938 (25 bp)
GCCGCCTTGTACATATACTGGGCAA
LOC_Os08g06010
Os.11885.1.S1_at--418--5611Chr08:3278009..3278033 (25 bp)
GACAAAGGGAACCTCTCTTGTTCAA
LOC_Os08g06010
Os.11885.1.S1_at--843--9651Chr08:3278030..3278054 (25 bp)
TCAAAGGTTACCCAAAGTCTGTGTT
LOC_Os08g06010
Os.11885.1.S1_at--299--2331Chr08:3278043..3278067 (25 bp)
AAAGTCTGTGTTTGCTGGCCATCTT
LOC_Os08g06010
Os.11885.1.S1_at--1144--3591Chr08:3278065..3278089 (25 bp)
CTTGGCCTCGTTTTGTATATGTAAA
LOC_Os08g06010
Target Sequence 
ATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATA
CATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCA
CCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCAT
GAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTNTGAGCCCAAAT
ATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTG
TATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA
TCTTGGCCTCGTTTTGTATATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis