Browse Element(s) Details

OsAffx.29059.1.S1_at

Description

tigr:9636.m00537
TID=OsAffx.29059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=mitogen-activated protein kinase MMK2 (EC 2.7.1.-) - alfalfa
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g06060	11/11	Mitogen-activated protein kinase homolog MMK2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g06010	Os.11885.1.S1_at	11/11	8	+	3274761..3278148	Glycerol 3-phosphate permease, putative, expressed
LOC_Os08g06020	Os.22692.1.S1_at	11/11	8	+	3278752..3283530	VAP27, putative, expressed
LOC_Os08g06040	Os.11517.1.S1_at	10/11	8	+	3286787..3289545	60S ribosomal protein L34, putative, expressed
LOC_Os08g06050	Os.18022.2.S1_x_at	11/11	8	+	3294695..3297913	Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050	Os.18022.1.S1_at	10/11	8	+	3294695..3297913	Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06050	Os.18022.2.S1_at	8/11	8	+	3294695..3297913	Type IIB DNA topoisomerase family protein, expressed
LOC_Os08g06060	OsAffx.29059.1.S1_at	11/11	8	+	3301253..3304155	Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06060	OsAffx.29059.1.S1_s_at	11/11	8	+	3301253..3304155	Mitogen-activated protein kinase homolog MMK2, putative, expressed
LOC_Os08g06070	Os.48069.1.S1_at	10/11	8	+	3306618..3311692	hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g06090	Os.55469.1.S1_s_at	11/11	8	+	3320015..3321237	Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000169	biological_process	activation of MAPK activity during osmolarity sensing
GO:0000302	biological_process	response to reactive oxygen species
GO:0006950	biological_process	response to stress
GO:0006970	biological_process	response to osmotic stress
GO:0006979	biological_process	response to oxidative stress
GO:0007165	biological_process	signal transduction
GO:0009607	biological_process	response to biotic stimulus
GO:0009723	biological_process	response to ethylene stimulus
GO:0009738	biological_process	abscisic acid mediated signaling
GO:0009862	biological_process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009868	biological_process	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200	biological_process	response to chitin
GO:0016310	biological_process	phosphorylation
GO:0042830	biological_process	defense response to pathogenic bacteria
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0004672	molecular_function	protein kinase activity
GO:0004707	molecular_function	MAP kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.29059.1.S1_at--1131--789	1	Chr08:3303386..3303410 (25 bp)	GGTTCCCCACTATGTCTAGTGGTGC	LOC_Os08g06060
OsAffx.29059.1.S1_at--1160--1065	1	Chr08:3303388..3303412 (25 bp)	TTCCCCACTATGTCTAGTGGTGCCA	LOC_Os08g06060
OsAffx.29059.1.S1_at--15--931	1	Chr08:3303389..3303413 (25 bp)	TCCCCACTATGTCTAGTGGTGCCAT	LOC_Os08g06060
OsAffx.29059.1.S1_at--284--421	1	Chr08:3303390..3303414 (25 bp)	CCCCACTATGTCTAGTGGTGCCATG	LOC_Os08g06060
OsAffx.29059.1.S1_at--145--333	1	Chr08:3303393..3303417 (25 bp)	CACTATGTCTAGTGGTGCCATGGAT	LOC_Os08g06060
OsAffx.29059.1.S1_at--608--203	1	Chr08:3303394..3303418 (25 bp)	ACTATGTCTAGTGGTGCCATGGATT	LOC_Os08g06060
OsAffx.29059.1.S1_at--592--369	1	Chr08:3303395..3303419 (25 bp)	CTATGTCTAGTGGTGCCATGGATTT	LOC_Os08g06060
OsAffx.29059.1.S1_at--424--75	1	Chr08:3303397..3303421 (25 bp)	ATGTCTAGTGGTGCCATGGATTTGC	LOC_Os08g06060
OsAffx.29059.1.S1_at--539--873	1	Chr08:3303398..3303422 (25 bp)	TGTCTAGTGGTGCCATGGATTTGCT	LOC_Os08g06060
OsAffx.29059.1.S1_at--136--341	1	Chr08:3303723..3303747 (25 bp)	CAGCTTCGATTTCGAGCAGCCGTCG	LOC_Os08g06060
OsAffx.29059.1.S1_at--880--155	1	Chr08:3303724..3303748 (25 bp)	AGCTTCGATTTCGAGCAGCCGTCGC	LOC_Os08g06060

Target Sequence

GGTTCCCCACTATGTCTAGTGGTGCCATGGATTTGCTTGAGAGGATGCTTGTGTTTGATCCCAGCAAAAGGATTACTGTT
GATGAAGCTCTGTGCCATCCATACTTGGCATCCCTTCATGAGATATATGATGAACCAGTCTGCCCAGCGCCTTTCAGCTT
CGATTTCGAGCAGCCGTCGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis