Browse Element(s) Details


Os.11265.1.S1_at

Description gb:AK067356.1
DB_XREF= gi:32977374
TID=Os.11265.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.11265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30857 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103J23, full insert sequence.
FL= gb:AK100173.1 gb:AK059223.1 gb:AK067356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1667010/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16630OsAffx.26598.2.S1_at2/113+9159994..9160812retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g16630OsAffx.26598.2.S1_x_at1/113+9159994..9160812retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g16640Os.2987.3.S1_x_at2/113+9162455..9163267retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16650NANA3+9165484..9166462retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16660NANA3+9174560..9176278hypothetical protein
LOC_Os03g16670Os.11265.1.S1_at10/113+9181592..9183768haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os03g16680OsAffx.25111.1.S1_at11/113+9196097..9196459hypothetical protein
LOC_Os03g16690Os.5423.1.S1_at11/113+9197870..9203156Oxysterol-binding protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11265.1.S1_at--58--9631Chr03:9183043..9183067 (25 bp)
TCAGGATCGCCAACGTGAACCCTCA
LOC_Os03g16670
Os.11265.1.S1_at--921--7351Chr03:9183057..9183183 (25 bp)
GTGAACCCTCACAAGGCGATTTTCT
LOC_Os03g16670
Os.11265.1.S1_at--513--1331Chr03:9183217..9183241 (25 bp)
AGAGGATCGGGCTCCACACGGTGCT
LOC_Os03g16670
Os.11265.1.S1_at--969--4651Chr03:9183370..9183394 (25 bp)
GCGTCGCCATCGAGACATCGGTGAC
LOC_Os03g16670
Os.11265.1.S1_at--1015--5711Chr03:9183423..9183447 (25 bp)
GACTCCGGCGAATCGCTCAGAACGA
LOC_Os03g16670
Os.11265.1.S1_at--670--9651Chr03:9183439..9183463 (25 bp)
TCAGAACGAGCAACCATCCATCCAT
LOC_Os03g16670
Os.11265.1.S1_at--149--8211NONE
GGAATTTCAGAATTGGCCGGGACAA
NONE
Os.11265.1.S1_at--1048--8411Chr03:9183514..9183538 (25 bp)
TGGCCGGGACAACAATACGTTCCAA
LOC_Os03g16670
Os.11265.1.S1_at--931--9811Chr03:9183584..9183608 (25 bp)
TAACAGCAATGTTGGAACGGGTCCT
LOC_Os03g16670
Os.11265.1.S1_at--832--8151Chr03:9183597..9183621 (25 bp)
GGAACGGGTCCTGTAGTATATATAT
LOC_Os03g16670
Os.11265.1.S1_at--927--10151Chr03:9183623..9183647 (25 bp)
TATCGGTCAGATCTTTGCATGTAAA
LOC_Os03g16670
Target Sequence 
TCAGGATCGCCAACGTGAACCCTCACAAGGCGATTTTCTTCGACGACAGCGTGAGGAACATCCAGGCGGGGAAGAGGATC
GGGCTCCACACGGTGCTGGTGGGCACGCCGCAGCGGGTGAAGGGCGCGGACCACGCGCTGGAGAGCATCCACAACATCAG
GGAGGCGCTGCCGGAGCTGTGGGAGGAGGCCGAGAAGGCGGAGGACGTGCTCATCTACTCCGACCGCGTCGCCATCGAGA
CATCGGTGACCGCGTAGGCCACACCTACTGTCTCTCCCGACTCCGGCGAATCGCTCAGAACGAGCAACCATCCATCCATC
CATGTCCATCCCTGGCCGGGCAGGTGATCATCAGGTGGGAATTTCAGAATTGGCCGGGACAACAATACGTTCCAAGAAAA
AAAGAGGAGGGTGTTCCGTGGAAGTTCAGGATTCAGAATGTAACAGCAATGTTGGAACGGGTCCTGTAGTATATATATGT
ATCGGTCAGATCTTTGCATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis