Browse Element(s) Details


Os.5423.1.S1_at

Description gb:AK060769.1
DB_XREF= gi:32970787
TID=Os.5423.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B01, full insert sequence.
FL= gb:AK119251.1 gb:AK060769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1669011/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16660NANA3+9174560..9176278hypothetical protein
LOC_Os03g16670Os.11265.1.S1_at10/113+9181592..9183768haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os03g16680OsAffx.25111.1.S1_at11/113+9196097..9196459hypothetical protein
LOC_Os03g16690Os.5423.1.S1_at11/113+9197870..9203156Oxysterol-binding protein, expressed
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5423.1.S1_at--1008--8151Chr03:9202820..9202844 (25 bp)
GGAAAATACACCGAGCACCGCGCTG
LOC_Os03g16690
Os.5423.1.S1_at--1122--8931Chr03:9202849..9202873 (25 bp)
TGACAGCTCAAGTGTGGCCGACGAC
LOC_Os03g16690
Os.5423.1.S1_at--908--6471Chr03:9202874..9202898 (25 bp)
GATACAGACGTCACTTCGATCGAAT
LOC_Os03g16690
Os.5423.1.S1_at--498--6371Chr03:9202891..9202915 (25 bp)
GATCGAATTCAACCCGTGGCAGTAC
LOC_Os03g16690
Os.5423.1.S1_at--637--1171Chr03:9202911..9202935 (25 bp)
AGTACAGTAGCTCATCTTCCCAATG
LOC_Os03g16690
Os.5423.1.S1_at--493--6931Chr03:9202942..9202966 (25 bp)
GTAGGGTCTGAAACTGCACATCCGT
LOC_Os03g16690
Os.5423.1.S1_at--700--151Chr03:9202973..9202997 (25 bp)
ATTATCCAATATGCTTCCAGGCCTT
LOC_Os03g16690
Os.5423.1.S1_at--297--10731Chr03:9202996..9203020 (25 bp)
TTGCTTTGCACGCTGATTCATCTCA
LOC_Os03g16690
Os.5423.1.S1_at--552--3431Chr03:9203022..9203046 (25 bp)
CAGAGTTTTCGTGCCTTTGTAGTAT
LOC_Os03g16690
Os.5423.1.S1_at--678--6871Chr03:9203043..9203067 (25 bp)
GTATTATGACCTTCACTTTTTCCCT
LOC_Os03g16690
Os.5423.1.S1_at--1027--6271Chr03:9203107..9203131 (25 bp)
GATGTAGTCCATATACTGTCGTTGT
LOC_Os03g16690
Target Sequence 
GGAAAATACACCGAGCACCGCGCTGCCATTGACAGCTCAAGTGTGGCCGACGACGATACAGACGTCACTTCGATCGAATT
CAACCCGTGGCAGTACAGTAGCTCATCTTCCCAATGATTTTCGTAGGGTCTGAAACTGCACATCCGTATTTTTATTATCC
AATATGCTTCCAGGCCTTGCTTTGCACGCTGATTCATCTCAGCAGAGTTTTCGTGCCTTTGTAGTATTATGACCTTCACT
TTTTCCCTTCTTCATGCTTCTACTGTTCAGGAAGTGATGGTGTATTCGATGTAGTCCATATACTGTCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis