Browse Element(s) Details


Os.7945.2.S1_s_at

Description gb:CB622390
DB_XREF= gi:29617378
DB_XREF=OSIIEa09A10.r
CLONE=OSIIEa09A10
TID=Os.7945.2
CNT=14
FEA=EST
TIER=Stack
STK=8
UG=Os.7945 (NCBI UniGene Cluster)
UG_TITLE=Translation initiation factor (GOS2) mRNA, complete cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1670011/11initiator-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16690Os.5423.1.S1_at11/113+9197870..9203156Oxysterol-binding protein, expressed
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000723biological_processtelomere maintenance
GO:0000781cellular_componentchromosome, telomeric region
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7945.2.S1_s_at--857--111Chr03:9231252..9231276 (25 bp)
ATTCTTTCAAGCCAGGGTTCTCTCT
LOC_Os03g16700
Os.7945.2.S1_s_at--1147--7671Chr03:9231266..9231290 (25 bp)
GGGTTCTCTCTCCTTGTGAATTTAA
LOC_Os03g16700
Os.7945.2.S1_s_at--318--6871Chr03:9231304..9231328 (25 bp)
GTATTTCTTTGGCAACTTTGTACAT
LOC_Os03g16700
Os.7945.2.S1_s_at--290--8511Chr03:9231313..9231337 (25 bp)
TGGCAACTTTGTACATGATGGTGAT
LOC_Os03g16700
Os.7945.2.S1_s_at--787--6291Chr03:9231348..9231372 (25 bp)
GATGATCCATGAACTGAGATCTGCA
LOC_Os03g16700
Os.7945.2.S1_s_at--1089--6031Chr03:9231363..9231387 (25 bp)
GAGATCTGCAGTGACTACTAACTCA
LOC_Os03g16700
Os.7945.2.S1_s_at--663--2351Chr03:9231426..9231450 (25 bp)
AAAGCTTCAGATTCTTTTGTCAATT
LOC_Os03g16700
Os.7945.2.S1_s_at--702--6131Chr03:9231493..9231517 (25 bp)
GAGGGATGGATCATTGCTTCCCCTT
LOC_Os03g16700
Os.7945.2.S1_s_at--989--9231Chr03:9231539..9231563 (25 bp)
TCCTAGGTGTACTATGTTTTCTTCA
LOC_Os03g16700
Os.7945.2.S1_s_at--715--3051Chr03:9231566..9231590 (25 bp)
AATCTTGTAGTTATCTTGGTCCCCT
LOC_Os03g16700
Os.7945.2.S1_s_at--393--10771Chr03:9231581..9231605 (25 bp)
TTGGTCCCCTCAAAGTTGTACTTGA
LOC_Os03g16700
Target Sequence 
ATTCTTTCAAGCCAGGGTTCTCTCTCCTTGTGAATTTAACCAAAGGTATGGGGTATTTCTTTGGCAACTTTGTACATGAT
GGTGATGGAGGAAGAAGATGATCCATGAACTGAGATCTGCAGTGACTACTAACTCACAATTTTTTTACAATTGTGGTTTA
AAAGAGAAGAGATTAAAGCTTCAGATTCTTTTGTCAATTCAATTCATTCTTTTGTTAGGATGAGAATGGTGAAAAGATAA
GGAGGGATGGATCATTGCTTCCCCTTTTTTTTTTNCCTTTTTTTGTTATCCTAGGTGTACTATGTTTTCTTCACCAATCT
TGTAGTTATCTTGGTCCCCTCAAAGTTGTACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7945.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis