Browse Element(s) Details


Os.3192.1.S1_at

Description gb:AK072620.1
DB_XREF= gi:32982643
TID=Os.3192.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Mic1 homolog (OSJNBa0050N08.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125B16, full insert sequence.
FL= gb:AK072620.1 gb:AK062191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2614011/11Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os03g167181/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3192.1.S1_at--374--7711Chr10:13220297..13220321 (25 bp)
GGGTGAACTGCCTGAAACGATTTGG
LOC_Os10g26140
Os.3192.1.S1_at--689--8091Chr10:13220320..13220344 (25 bp)
GGCACGTTTTATGCAAATCCCGTAC
LOC_Os10g26140
Os.3192.1.S1_at--790--8511Chr10:13220406..13220430 (25 bp)
TGGAACGAGGTTGCTCAGTGAGACA
LOC_Os10g26140
Os.3192.1.S1_at--644--6071Chr10:13220455..13220479 (25 bp)
GAGTTTCTGCGAGCCTTTCGACACT
LOC_Os10g26140
Os.3192.1.S1_at--355--5631Chr10:13220474..13220498 (25 bp)
GACACTACGACCGAACAGAACTGCT
LOC_Os10g26140
Os.3192.1.S1_at--224--1991Chr10:13220493..13220517 (25 bp)
ACTGCTGGGAAATCCATGACTTGCA
LOC_Os10g26140
Os.3192.1.S1_at--696--771Chr10:13220580..13220604 (25 bp)
ATGTGAAATTCCTCACTTGGATGGG
LOC_Os10g26140
Os.3192.1.S1_at--784--7851Chr10:13220604..13220628 (25 bp)
GGTATGAGATCAAGTGTCCCTGGCA
LOC_Os10g26140
Os.3192.1.S1_at--228--2871Chr10:13220615..13220639 (25 bp)
AAGTGTCCCTGGCATGTAGGTCCAA
LOC_Os10g26140
Os.3192.1.S1_at--718--6932Chr10:13220630..13220654 (25 bp)
GTAGGTCCAAGCCAAGTATGCAGAA
LOC_Os10g26140
Os.3192.1.S1_at--1113--2331Chr10:13220742..13220766 (25 bp)
AAAGACTCTCATTTATTGCCTATAT
LOC_Os10g26140
Target Sequence 
GGGTGAACTGCCTGAAACGATTTGGCACGTTTTATGCAAATCCCGTACAGAAGAAACTTGATACGAGGAATGGTGTAAAG
TTCAGACGATTTAAGTATAATTGAACAAATGGAACGAGGTTGCTCAGTGAGACAGTGAGGATTGTGATGAACGAATTNGA
GTTTCTGCGAGCCTTTCGACACTACGACCGAACAGAACTGCTGGGAAATCCATGACTTGCAATGTGGTNNGTCTTTTTTC
TGAAAGCTTATCGTATTTATTGTGGAAATTCTGAAAACTCTTCATGTGAAATTCCTCACTTGGATGGGGTATGAGATCAA
GTGTCCCTGGCATGTAGGTCCAAGCCAAGTATGCAGAAGAGGTCACTGTCGGATGGGGTGAGGAGTGGGGAATGTTTAAT
TTAGGTGTTTTTTTTCTTTTTTTGCAGGGTTTTTTTTCTTTTTATAAAGACTCTCATTTATTGCCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis