Browse Element(s) Details


OsAffx.30539.1.S1_at

Description tigr:9638.m02229
TID=OsAffx.30539.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2618010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified
LOC_Os10g26220NANA10+13251184..13254022hypothetical protein
LOC_Os10g26230NANA10+13256386..13257693hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30539.1.S1_at--790--8111Chr10:13231498..13231522 (25 bp)
GGACGAGGATGGCACATGGGAGATT
LOC_Os10g26180
OsAffx.30539.1.S1_at--88--5491Chr10:13231565..13231589 (25 bp)
GAACATGCAGAGGACACCGGTGGAT
LOC_Os10g26180
OsAffx.30539.1.S1_at--513--2171Chr10:13231578..13231602 (25 bp)
ACACCGGTGGATCTGGTGAGCATGA
LOC_Os10g26180
OsAffx.30539.1.S1_at--1009--6131Chr10:13231615..13231639 (25 bp)
GAGGGATCAAGAACTTTGCTTCACC
LOC_Os10g26180
OsAffx.30539.1.S1_at--938--351Chr10:13231620..13231644 (25 bp)
ATCAAGAACTTTGCTTCACCGTTGC
LOC_Os10g26180
OsAffx.30539.1.S1_at--297--2751Chr10:13231623..13231647 (25 bp)
AAGAACTTTGCTTCACCGTTGCAAG
LOC_Os10g26180
OsAffx.30539.1.S1_at--599--1431Chr10:13231624..13231648 (25 bp)
AGAACTTTGCTTCACCGTTGCAAGC
LOC_Os10g26180
OsAffx.30539.1.S1_at--293--2531Chr10:13231626..13231650 (25 bp)
AACTTTGCTTCACCGTTGCAAGCTC
LOC_Os10g26180
OsAffx.30539.1.S1_at--1106--9231Chr10:13231667..13231691 (25 bp)
TCCATCACTCACTGGCGGCGGCGAG
LOC_Os10g26180
OsAffx.30539.1.S1_at--201--5751NONE
GACGGCAGTGGGAAGAATTCGTATC
NONE
OsAffx.30539.1.S1_at--844--5192Chr10:13232207..13232231 (25 bp)
GAATTCGTATCTGGAAAATAGCAAC
LOC_Os10g26180
Target Sequence 
GGACGAGGATGGCACATGGGAGATTGGGGGTGGGGATTGTGCGGTGGAGATTGGGAGCGAGGGCGGCGAACATGCAGAGG
ACACCGGTGGATCTGGTGAGCATGAGAGAAAGGGGGAGAGGGATCAAGAACTTTGCTTCACCGTTGCAAGCTCCAACCTC
GACCTCAACTCCATCACTCACTGGCGGCGGCGAGCCGAGGACGGCAGTGGGAAGAATTCGTATCTGGAAAATAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis