Browse Element(s) Details


OsAffx.20365.1.S1_s_at

Description gb:NM_196385.1
DB_XREF= gi:37534129
TID=OsAffx.20365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050N08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2616411/11endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os12g226201/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified
LOC_Os10g26220NANA10+13251184..13254022hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20365.1.S1_s_at--483--5051Chr10:13226580..13226604 (25 bp)
GAAAACGACGGCGACGATCCCGCTT
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--217--5372Chr12:12779648..12779672 (25 bp)
GAAGACCTTCAAAATCATGACATAC
LOC_Os12g22620
OsAffx.20365.1.S1_s_at--459--8951Chr10:13228031..13228055 (25 bp)
TGACATACAATGTCTGGATCAGAGA
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--688--1351Chr10:13228051..13228075 (25 bp)
AGAGAGGATATTGAACTGCACAGAA
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--708--2551Chr10:13228064..13228088 (25 bp)
AACTGCACAGAAGGCTGGGCGCTCT
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--82--2951Chr10:13228074..13228098 (25 bp)
AAGGCTGGGCGCTCTTGGAGATCTT
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--593--7571Chr10:13228080..13228104 (25 bp)
GGGCGCTCTTGGAGATCTTATTCAA
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--1095--1271Chr10:13228092..13228116 (25 bp)
AGATCTTATTCAACTTCACAACCCA
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--628--10411Chr10:13228097..13228121 (25 bp)
TTATTCAACTTCACAACCCAGACTT
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--739--10511Chr10:13228106..13228130 (25 bp)
TTCACAACCCAGACTTCATATGCTT
LOC_Os10g26164
OsAffx.20365.1.S1_s_at--347--2611Chr10:13228111..13228135 (25 bp)
AACCCAGACTTCATATGCTTCCAGG
LOC_Os10g26164
Target Sequence 
GAAAACGACGGCGACGATCCCGCTTCCTCGCCCCCTCCTCCGAGGGCGAGGAAGAAGCGGGTGCGCGAGGCGTGCGCCGA
CGAGGAGGAGGAGGAGGAGGGCGAGGGGGCAGATGGGGCGGGTTCGCCGCGTCCCTCCGACGCCGCCGCCGCCAAGAAAA
AAAAATTTGAGAATAATTTAAACAAGAAGACCTTCAAAATCATGACATACAATGTCTGGATCAGAGAGGATATTGAACTG
CACAGAAGGCTGGGCGCTCTTGGAGATCTTATTCAACTTCACAACCCAGACTTCATATGCTTCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20365.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis