Browse Element(s) Details


Os.50366.1.S1_x_at

Description gb:AK120891.1
DB_XREF= gi:37990514
TID=Os.50366.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029H17, full insert sequence.
FL= gb:AK120891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2615010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50366.1.S1_x_at--186--3211Chr10:13221852..13221876 (25 bp)
CAATGGCGGACATCGCGCTGCTGGT
LOC_Os10g26150
Os.50366.1.S1_x_at--945--6171Chr10:13221823..13221847 (25 bp)
GAGGAGTTCGAGAAGATGACCAAGA
LOC_Os10g26150
Os.50366.1.S1_x_at--99--6311Chr10:13221809..13221833 (25 bp)
GATGACCAAGAAGTTGAAGCAGCAG
LOC_Os10g26150
Os.50366.1.S1_x_at--70--1252Chr07:1292736..1292848 (25 bp)
AGTTGAAGCAGCAGAGGCAGCAGCA
NONE
Os.50366.1.S1_x_at--549--9231Chr10:13221576..13221600 (25 bp)
TCCTTTGTTGGGAAGTGATTTGGTG
LOC_Os10g26150
Os.50366.1.S1_x_at--1117--9191Chr10:13221539..13221563 (25 bp)
TCCAATTTGGAGGATTTGATTTTGT
LOC_Os10g26150
Os.50366.1.S1_x_at--343--10371Chr10:13221513..13221537 (25 bp)
TTTTCTTTTCCTCTTTACCAGTATG
LOC_Os10g26150
Os.50366.1.S1_x_at--777--9251Chr10:13221505..13221529 (25 bp)
TCCTCTTTACCAGTATGTGATGTGT
LOC_Os10g26150
Os.50366.1.S1_x_at--958--7391Chr10:13221489..13221513 (25 bp)
GTGATGTGTACATATATCGACTTTG
LOC_Os10g26150
Os.50366.1.S1_x_at--397--531Chr10:13221474..13221498 (25 bp)
ATCGACTTTGTGAAGAAATCGCAAC
LOC_Os10g26150
Os.50366.1.S1_x_at--159--6451Chr10:13221465..13221489 (25 bp)
GTGAAGAAATCGCAACTTTTTCTCC
NONE
Target Sequence 
CAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAG
GGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGC
GGCGGTGAGGACGAGGGTNGCGGCGCTNAAGGANCCCGCCGCCGCGCANGGGCTCGCCGCCGTCGATGGCTTCTTCTCCG
CTTGATCTTTCNTTTGTTTCTTCTTCTNCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCANNCCATATCCAAT
TTGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGTACATATATCGACTTTGTGAAGAAATCG
CAACTTTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50366.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis