Browse Element(s) Details


Os.57053.1.S1_at

Description gb:AK111463.1
DB_XREF= gi:32996672
TID=Os.57053.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D03, full insert sequence.
FL= gb:AK111463.1 gb:AK110822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g261401/11Colon cancer-associated protein Mic1-like containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57053.1.S1_at--534--3151Chr06:4053794..4053818 (25 bp)
AATTGCCTTCTCCATGACTGAGGGT
NONE
Os.57053.1.S1_at--103--9611Chr06:4053820..4053844 (25 bp)
TCATATGCCTTGTGCTTGTTAGCGA
NONE
Os.57053.1.S1_at--166--6731Chr06:4053837..4053861 (25 bp)
GTTAGCGAGGGTCTGCAACTCTGCA
NONE
Os.57053.1.S1_at--764--5151Chr06:4053851..4053875 (25 bp)
GCAACTCTGCATACAACACTCTGAT
NONE
Os.57053.1.S1_at--120--871Chr06:4053900..4053924 (25 bp)
ATGGCTGTTCTGAAGCTCTTGACCA
NONE
Os.57053.1.S1_at--200--132Chr10:13219158..13219178 (21 bp)
ATTCATAGTCTTTGGCTCTTTGCAT
LOC_Os10g26140
Os.57053.1.S1_at--433--2651Chr06:4054021..4054045 (25 bp)
AACCAAGAGCCTGGTCCATGGTCAA
NONE
Os.57053.1.S1_at--57--31Chr06:4054083..4054107 (25 bp)
ATTGGCTTTGCTGCCTTAGAAAACT
NONE
Os.57053.1.S1_at--366--5311Chr06:4054117..4054141 (25 bp)
GAAGTACCTAATTTCGTGCACGACA
NONE
Os.57053.1.S1_at--30--3211Chr06:4054269..4054293 (25 bp)
CAATGGATCTTCTGGCTTGTTTAGA
NONE
Os.57053.1.S1_at--637--8151Chr06:4054330..4054354 (25 bp)
GGAAATGGTGTACTCTCTGATTGCC
NONE
Target Sequence 
AATTGCCTTCTCCATGACTGAGGGTTTCATATGCCTTGTGCTTGTTAGCGAGGGTCTGCAACTCTGCATACAACACTCTG
ATGAGCGGGCTGTTAGATATGGGCAAATGGCTGTTCTGAAGCTCTTGACCAAGTACATGATCGACAAAAGTATCGTCCAA
TCGCAAAGACATTCAACATTTTTATTCATAGTCTTTGGCTCTTTGCATTAGGGAGAAAGTCTTCCATAACCAAGAGCCTG
GTCCATGGTCAAGGTTTTACTAATGTTGTGGCATACATTATCCTCATTGATTGGCTTTGCTGCCTTAGAAAACTTAATGA
GTTGAAGTACCTAATTTCGTGCACGACAGCGCAGGATATTGCTCCAGAATCCAGATGAAGTCACTCAGATACATTATTGG
TTGATGAGATTATGCAGAGATGGAAAATTTGACAAGGATACTTATATTTTTATGAAATCACTTAAAGTGGATTTCCAATG
GATCTTCTGGCTTGTTTAGAGTGGTGAATAATATAGAGATTCACCGTGTATTTGAAGGAAATGGTGTACTCTCTGATTGC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis