Browse Element(s) Details


OsAffx.18403.1.S1_at

Description gb:NM_196379.1
DB_XREF= gi:37534117
TID=OsAffx.18403.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0050N08.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2610011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18403.1.S1_at--150--3971Chr10:13189586..13189610 (25 bp)
CGGAGGACGTGAGCAGCGACTTCAT
LOC_Os10g26100
OsAffx.18403.1.S1_at--141--971Chr10:13189589..13189613 (25 bp)
AGGACGTGAGCAGCGACTTCATCAA
LOC_Os10g26100
OsAffx.18403.1.S1_at--354--3991Chr10:13189593..13189617 (25 bp)
CGTGAGCAGCGACTTCATCAAGCAG
LOC_Os10g26100
OsAffx.18403.1.S1_at--268--2831Chr10:13189624..13189648 (25 bp)
AAGTTCGCGGTGACGGTGTATAAGC
LOC_Os10g26100
OsAffx.18403.1.S1_at--845--10631Chr10:13189627..13189651 (25 bp)
TTCGCGGTGACGGTGTATAAGCTCG
LOC_Os10g26100
OsAffx.18403.1.S1_at--740--3951Chr10:13189631..13189655 (25 bp)
CGGTGACGGTGTATAAGCTCGCCAG
LOC_Os10g26100
OsAffx.18403.1.S1_at--1136--7711Chr10:13189658..13189682 (25 bp)
GGGTGTCCCTGTACTACGTCAGCAC
LOC_Os10g26100
OsAffx.18403.1.S1_at--177--8751Chr10:13189667..13189691 (25 bp)
TGTACTACGTCAGCACGTCGCAGTG
LOC_Os10g26100
OsAffx.18403.1.S1_at--1021--9651Chr10:13189676..13189700 (25 bp)
TCAGCACGTCGCAGTGCTGGTCCAA
LOC_Os10g26100
OsAffx.18403.1.S1_at--1063--4491Chr10:13189717..13189741 (25 bp)
GCCGACGACTACTGGATGGTGCTCA
LOC_Os10g26100
OsAffx.18403.1.S1_at--422--5791Chr10:13189720..13189744 (25 bp)
GACGACTACTGGATGGTGCTCACGG
LOC_Os10g26100
Target Sequence 
CGGAGGACGTGAGCAGCGACTTCATCAAGCAGGTGGGGAAGTTCGCGGTGACGGTGTATAAGCTCGCCAGGGGGGTGTCC
CTGTACTACGTCAGCACGTCGCAGTGCTGGTCCAAGCCCGCCGGCGGCGGCGCCGACGACTACTGGATGGTGCTCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis