Browse Element(s) Details


Os.26480.1.A1_at

Description gb:CB625883
DB_XREF= gi:29620872
DB_XREF=OSIIEa15K07.r
CLONE=OSIIEa15K07
TID=Os.26480.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.26480 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:Q9T034 (A.thaliana) SYFA_ARATH Probable phenylalanyl-tRNA synthetase alpha chain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2613011/11phenylalanyl-tRNA synthetase alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006432biological_processphenylalanyl-tRNA aminoacylation
GO:0004826molecular_functionphenylalanine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26480.1.A1_at--149--9911Chr10:13206770..13206794 (25 bp)
TACTAATTGAAGTGTATGCAATCCT
LOC_Os10g26130
Os.26480.1.A1_at--88--1111Chr10:13206760..13206784 (25 bp)
AGTGTATGCAATCCTTATTTTTGGC
LOC_Os10g26130
Os.26480.1.A1_at--657--651Chr10:13206755..13206779 (25 bp)
ATGCAATCCTTATTTTTGGCTGGAC
LOC_Os10g26130
Os.26480.1.A1_at--134--3191Chr10:13206752..13206776 (25 bp)
CAATCCTTATTTTTGGCTGGACTAA
LOC_Os10g26130
Os.26480.1.A1_at--296--571Chr10:13206750..13206774 (25 bp)
ATCCTTATTTTTGGCTGGACTAACA
LOC_Os10g26130
Os.26480.1.A1_at--629--8331Chr10:13206738..13206762 (25 bp)
GGCTGGACTAACAATTTTAAGAAAT
LOC_Os10g26130
Os.26480.1.A1_at--884--5571Chr10:13206718..13206742 (25 bp)
GAAATTTGTTCTGACTATACTGTTT
LOC_Os10g26130
Os.26480.1.A1_at--37--8811Chr10:13206712..13206736 (25 bp)
TGTTCTGACTATACTGTTTTGACTA
LOC_Os10g26130
Os.26480.1.A1_at--1013--5691Chr10:13206706..13206730 (25 bp)
GACTATACTGTTTTGACTAGGCCAA
LOC_Os10g26130
Os.26480.1.A1_at--622--10171Chr10:13206703..13206727 (25 bp)
TATACTGTTTTGACTAGGCCAACAA
LOC_Os10g26130
Os.26480.1.A1_at--287--3871Chr10:13206699..13206723 (25 bp)
CTGTTTTGACTAGGCCAACAATGAT
LOC_Os10g26130
Target Sequence 
TACTAATTGAAGTGTATGCAATCCTTATTTTTGGCTGGACTAACAATTTTAAGAAATTTGTTCTGACTATACTGTTTTGA
CTAGGCCAACAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26480.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis