Browse Element(s) Details


OsAffx.30538.1.S1_x_at

Description gb:NM_196384.1
DB_XREF= gi:37534127
TID=OsAffx.30538.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0050N08.25), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2615011/11expressed protein
LOC_Os05g393801/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30538.1.S1_x_at--187--3211Chr10:13221852..13221876 (25 bp)
CAATGGCGGACATCGCGCTGCTGGT
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--944--6171Chr10:13221823..13221847 (25 bp)
GAGGAGTTCGAGAAGATGACCAAGA
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--100--6311Chr10:13221809..13221833 (25 bp)
GATGACCAAGAAGTTGAAGCAGCAG
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--649--9571Chr10:13221621..13221645 (25 bp)
TCTTCTCCGCTTGATCTTTCTTTGT
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--9--8852Chr05:23018537..23018556 (20 bp)
TGATCTTTCTTTGTTTCTTCTTCTT
LOC_Os05g39380
OsAffx.30538.1.S1_x_at--550--9231Chr10:13221576..13221600 (25 bp)
TCCTTTGTTGGGAAGTGATTTGGTG
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--213--6511Chr10:13221560..13221584 (25 bp)
GATTTGGTGAAGCAGGCCATATCCA
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--560--7771Chr10:13221555..13221579 (25 bp)
GGTGAAGCAGGCCATATCCAATTTG
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--1118--9191Chr10:13221539..13221563 (25 bp)
TCCAATTTGGAGGATTTGATTTTGT
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--344--10371Chr10:13221513..13221537 (25 bp)
TTTTCTTTTCCTCTTTACCAGTATG
LOC_Os10g26150
OsAffx.30538.1.S1_x_at--776--9251Chr10:13221505..13221529 (25 bp)
TCCTCTTTACCAGTATGTGATGTGT
LOC_Os10g26150
Target Sequence 
CAATGGCGGACATCGCGCTGCTGGTGGTGGAGGAGTTCGAGAAGATGACCAAGAAGTTGAAGCAGCAGAGGCAGCAGCAG
GGCCGGATCAGCGAGGAGGTGCCCGCCGGGGATGCGGCGGCGGCTTCGCGGGCGGGGGAGTGGGGTTCTTGGGCGGCGGC
GGCGGTGAGGACGAGGGTGGCGGCGCTGAAGGAGCCCGCCGCCGCGCAGGGGCTCGCCGCCGTCGATGGCTTCTTCTCCG
CTTGATCTTTCTTTGTTTCTTCTTCTTCTTCTTTTTTCCTTTGTTGGGAAGTGATTTGGTGAAGCAGGCCATATCCAATT
TGGAGGATTTGATTTTGTTTTTTCTTTTCCTCTTTACCAGTATGTGATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30538.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis