Browse Element(s) Details


Os.3191.2.S1_s_at

Description gb:NM_196382.1
DB_XREF= gi:37534123
TID=Os.3191.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3191 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative phenylalanyl-tRNA synthetase alpha chain (OSJNBa0050N08.23), mRNA.
PROD=putative phenylalanyl-tRNA synthetase alphachain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2613011/11phenylalanyl-tRNA synthetase alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006432biological_processphenylalanyl-tRNA aminoacylation
GO:0004826molecular_functionphenylalanine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3191.2.S1_s_at--275--6751Chr10:13206978..13207002 (25 bp)
GTTCAGACCTGAAATGTTACTTCCC
LOC_Os10g26130
Os.3191.2.S1_s_at--20--5831Chr10:13206973..13206997 (25 bp)
GACCTGAAATGTTACTTCCCATGGG
LOC_Os10g26130
Os.3191.2.S1_s_at--139--2991Chr10:13206966..13206990 (25 bp)
AATGTTACTTCCCATGGGACTGCCA
LOC_Os10g26130
Os.3191.2.S1_s_at--405--10651Chr10:13206958..13206982 (25 bp)
TTCCCATGGGACTGCCAGAGGGTGT
LOC_Os10g26130
Os.3191.2.S1_s_at--109--5731Chr10:13206949..13206973 (25 bp)
GACTGCCAGAGGGTGTTAATGTTAT
LOC_Os10g26130
Os.3191.2.S1_s_at--762--4351Chr10:13206944..13206968 (25 bp)
CCAGAGGGTGTTAATGTTATTGCAT
LOC_Os10g26130
Os.3191.2.S1_s_at--1004--4391Chr10:13206686..13206710 (25 bp)
GCCAACAATGATTCTTTACGGCATC
LOC_Os10g26130
Os.3191.2.S1_s_at--564--6551Chr10:13206677..13206701 (25 bp)
GATTCTTTACGGCATCGACAACATT
LOC_Os10g26130
Os.3191.2.S1_s_at--221--8271Chr10:13206667..13206691 (25 bp)
GGCATCGACAACATTCGAGACCTCT
LOC_Os10g26130
Os.3191.2.S1_s_at--7--3591Chr10:13206656..13206680 (25 bp)
CATTCGAGACCTCTTTGGACCAAAG
LOC_Os10g26130
Os.3191.2.S1_s_at--932--7911Chr10:13206553..13206577 (25 bp)
GGTTGATTTCAACCTCATCAAGAGC
LOC_Os10g26130
Target Sequence 
GTTCAGACCTGAAATGTTACTTCCCATGGGACTGCCAGAGGGTGTTAATGTTATTGCATGGGGTCTTTCACTAGAAAGGC
CAACAATGATTCTTTACGGCATCGACAACATTCGAGACCTCTTTGGACCAAAGGTTGATTTCAACCTCATCAAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3191.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis