Browse Element(s) Details


Os.12807.1.S1_x_at

Description gb:AK107314.1
DB_XREF= gi:32992523
TID=Os.12807.1
CNT=76
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Glutelin II precursor (OSJNBa0050N08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D11, full insert sequence.
FL= gb:AK107314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2606011/11Glutelin type-A 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12807.1.S1_x_at--217--7691Chr10:13166454..13166478 (25 bp)
GGTGTTCAACGGAGAGCTTCGTCGT
LOC_Os10g26060
Os.12807.1.S1_x_at--636--9711Chr10:13166449..13166473 (25 bp)
TCAACGGAGAGCTTCGTCGTGGACA
LOC_Os10g26060
Os.12807.1.S1_x_at--1143--3951Chr10:13166445..13166469 (25 bp)
CGGAGAGCTTCGTCGTGGACAGCTA
LOC_Os10g26060
Os.12807.1.S1_x_at--567--5911Chr10:13166441..13166465 (25 bp)
GAGCTTCGTCGTGGACAGCTACTTA
LOC_Os10g26060
Os.12807.1.S1_x_at--524--10611Chr10:13166437..13166461 (25 bp)
TTCGTCGTGGACAGCTACTTATTGT
LOC_Os10g26060
Os.12807.1.S1_x_at--885--7191Chr10:13166434..13166458 (25 bp)
GTCGTGGACAGCTACTTATTGTACC
LOC_Os10g26060
Os.12807.1.S1_x_at--811--8511Chr10:13166430..13166454 (25 bp)
TGGACAGCTACTTATTGTACCACAA
LOC_Os10g26060
Os.12807.1.S1_x_at--336--2031Chr10:13166421..13166445 (25 bp)
ACTTATTGTACCACAACACTATGTA
LOC_Os10g26060
Os.12807.1.S1_x_at--267--1691Chr10:13166412..13166436 (25 bp)
ACCACAACACTATGTAGTTGTAAAG
LOC_Os10g26060
Os.12807.1.S1_x_at--992--2391Chr10:13165944..13165968 (25 bp)
AAACAGAGAATGGACAACCCTCCCT
LOC_Os10g26060
Os.12807.1.S1_x_at--504--1891Chr10:13165942..13165966 (25 bp)
ACAGAGAATGGACAACCCTCCCTTA
LOC_Os10g26060
Target Sequence 
GGTGTTCAACGGAGAGCTTCGTCGTGGACAGCTACTTATTGTACCACAACACTATGTAGTTGTAAAGAAGGCACAAAGAG
AAGGANNNTGTGCTTACATTGCATTCAAGNNACAANCCCTAACTCTATGGTAAGCCACATTGCAGGAAAGAGTTCCATCT
TCCGTGCTCTCCCAACTGATGTTCTAGCAAATGCATATCGCATCTCAAGAGAAGAGGCTCAGAGGCTCAAGCATAACNAN
GAGGAGATGAGTTCGGTGCATTCACTCCCCTCCAATACNANAGAGCTACCNAAGACGTTTATAATGTGGCGGAATCCTCT
TAAGTTGGCANATGCNAGATAAAGAATAACTAAATAAATAAATAAATAAATTGCANAGCNNATTGCGTTGCTGCTATGTA
CTGTAAAAGTTTCTTATAATATCAGTTCTGAATGCNTAAGGACATCCCNTCNAAGATGGTCTTTCTATTTNTTGTGTTCC
CGTTCCAATGTACTGTTGGTATCCTCTTGGAGATTCATCAATATGAGAAAACAGAGAATGGACAACCCTCCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12807.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis