Browse Element(s) Details


OsAffx.20368.1.S1_at

Description tigr:9638.m02218
TID=OsAffx.20368.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2607011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20368.1.S1_at--195--5431Chr10:13170983..13171007 (25 bp)
GAAGCCAGATGAGATTACGTTTATA
LOC_Os10g26070
OsAffx.20368.1.S1_at--91--291Chr10:13170961..13170985 (25 bp)
ATAGGTGTTCTTTCAGCATGCTGTC
LOC_Os10g26070
OsAffx.20368.1.S1_at--488--6491Chr10:13170845..13170869 (25 bp)
GATAGACTTACTAGGCAGGGCAGGC
LOC_Os10g26070
OsAffx.20368.1.S1_at--293--3471Chr10:13170830..13170854 (25 bp)
CAGGGCAGGCCATTTAGACGAAGCA
LOC_Os10g26070
OsAffx.20368.1.S1_at--873--5931Chr10:13170805..13170829 (25 bp)
GAGCAGCTAGTAAACACTATGCCTA
LOC_Os10g26070
OsAffx.20368.1.S1_at--886--591Chr10:13170787..13170811 (25 bp)
ATGCCTATGGAACCTGATGCAGTAG
LOC_Os10g26070
OsAffx.20368.1.S1_at--837--431Chr10:13170751..13170775 (25 bp)
ATCTTCTTTGCTTGTAGGATGCAAG
LOC_Os10g26070
OsAffx.20368.1.S1_at--495--10091Chr10:13170737..13170761 (25 bp)
TAGGATGCAAGGTAATATCTCTCTT
LOC_Os10g26070
OsAffx.20368.1.S1_at--228--8211Chr10:13170664..13170688 (25 bp)
GGAATCTATGTGCTACTGGCTAATA
LOC_Os10g26070
OsAffx.20368.1.S1_at--580--1231Chr10:13170566..13170590 (25 bp)
AGTTCCTGGGTGTAGCTGCATTGAG
LOC_Os10g26070
OsAffx.20368.1.S1_at--37--8951Chr10:13170476..13170500 (25 bp)
TGACTGCTTGCATGAGATCACCCTA
LOC_Os10g26070
Target Sequence 
GAAGCCAGATGAGATTACGTTTATAGGTGTTCTTTCAGCATGCTGTCATGCTGGTTTGGTGAAAGAAGGTCGGGAATTTT
TCTCTCTGATGGAGACAAAATATCATCTTGAGAGGAAAATGAAACATTATTCATGTATGATAGACTTACTAGGCAGGGCA
GGCCATTTAGACGAAGCAGAGCAGCTAGTAAACACTATGCCTATGGAACCTGATGCAGTAGTTTGGGGTGCTATCTTCTT
TGCTTGTAGGATGCAAGGTAATATCTCTCTTGGAGAAAAGGCAGCAATGAAATTGGTAGAAATTGATCCTAGTGATAGTG
GAATCTATGTGCTACTGGCTAATATGTATGCAGAAGCGAACATGAGGAAGAAGGCTGACAAAGTCAGGGCTATGATGAGA
CATTTGGGAGTGGAGAAAGTTCCTGGGTGTAGCTGCATTGAGTTGAATGGTGTGGTTCATGAATTTATCGTGAAGGACAA
GTCACATATGGATAGTCATGCTATTTATGACTGCTTGCATGAGATCACCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis