Browse Element(s) Details


Os.53240.1.A1_x_at

Description gb:AK071533.1
DB_XREF= gi:32981556
TID=Os.53240.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104C07, full insert sequence.
FL= gb:AK071533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1673011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53240.1.A1_x_at--1114--5971Chr03:9248672..9248696 (25 bp)
GAGACTCACGGCTATACTCCAATTG
LOC_Os03g16730
Os.53240.1.A1_x_at--408--9111Chr03:9248728..9248752 (25 bp)
TGCTGCTACAGCTGGTGGTACTTAT
LOC_Os03g16730
Os.53240.1.A1_x_at--809--2051Chr03:9248774..9248798 (25 bp)
ACTTCTGCCCAGTATGACAACTTCA
LOC_Os03g16730
Os.53240.1.A1_x_at--618--5611Chr03:9248789..9248813 (25 bp)
GACAACTTCAGGGAGCGTCCAGACT
LOC_Os03g16730
Os.53240.1.A1_x_at--135--1411Chr03:9248809..9248833 (25 bp)
AGACTACCCAGAGTTCCGTGGTCGT
LOC_Os03g16730
Os.53240.1.A1_x_at--979--9511Chr03:9248913..9248937 (25 bp)
TCTAGAGATGGCTTCTTCAAACACA
LOC_Os03g16730
Os.53240.1.A1_x_at--529--10311Chr03:9248953..9248977 (25 bp)
TTTCTTGATCTCAGCTTGGTGCGAA
LOC_Os03g16730
Os.53240.1.A1_x_at--747--4191Chr03:9249124..9249148 (25 bp)
CCCTGTAATTCTGCTTCTTTGTAAC
LOC_Os03g16730
Os.53240.1.A1_x_at--73--331Chr03:9249180..9249204 (25 bp)
ATACTCCCATGGCTTCTCTGTTGTT
LOC_Os03g16730
Os.53240.1.A1_x_at--342--4911Chr03:9249191..9249215 (25 bp)
GCTTCTCTGTTGTTCATCCATATCA
LOC_Os03g16730
Os.53240.1.A1_x_at--485--251Chr03:9249229..9249253 (25 bp)
ATATCAGGGAGGCAATTCTGCGAGC
LOC_Os03g16730
Target Sequence 
GAGACTCACGGCTATACTCCAATTGCAGCAAAACCGCCGCCGCCTCCACCTGCTGCTGCTGCTACAGCTGGTGGTACTTA
TGGAGAAGCTCATCGGGGTTATACTTCTGCCCAGTATGACAACTTCAGGGAGCGTCCAGACTACCCAGAGTTCCGTGGTC
GTGGCCGAGGTGAANGTCATGNTCTTGAGCACCGTGGTCNAATTCCCTGGTGNTCGTGCTTATAATTCTGGTGNCCGAAG
ATTCTAGAGATGGCTTCTTCAAACACAGCCAATTGGCTNATCTTTCTTGATCTCAGCTTGGTGCGAAATGCGAATTGCAT
TAGATGNTTGGTTGCAGTCTCGNTTAAACCTATATACNTGGAAAAGCTGTTTACAATTTAAACTGCTGGTATGCAACCAT
CAAACNACACCAGATGTCACCGGCNCTGTTGTGCTTGTTGTTTCCACNTACANCCCTGTAATTCTGCTTCTTTGTAACTT
GGTAGAGAANGATNGAGAATAATTTATNCCATACTCCCATGGCTTCTCTGTTGTTCATCCATATCATGCAATGAGGATAA
TATCAGGGAGGCAATTCTGCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53240.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis