Browse Element(s) Details


OsAffx.31578.4.S1_at

Description tigr:9631.m01632
TID=OsAffx.31578.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1671810/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31578.4.S1_at--453--9151Chr03:9244238..9244262 (25 bp)
TGCGCTGCTCCACCCGATAGTGGCG
LOC_Os03g16718
OsAffx.31578.4.S1_at--1012--7631Chr03:9244096..9244120 (25 bp)
GGGAGCGACGCCTCAGCTGCTGTGG
LOC_Os03g16718
OsAffx.31578.4.S1_at--563--2671Chr03:9244050..9244071 (22 bp)
AAGCGGAAGCTCCTTGCTCCGGGAC
LOC_Os03g16718
OsAffx.31578.4.S1_at--203--3631NONE
CTTGCTCCGGGACGAAAATCAGATT
NONE
OsAffx.31578.4.S1_at--1021--2512Chr03:9243272..9243296 (25 bp)
AACTTATTCCGCCTAGCAAGAGATG
LOC_Os03g16718
OsAffx.31578.4.S1_at--331--3712Chr03:9243260..9243284 (25 bp)
CTAGCAAGAGATGCGCGACGCTCGC
LOC_Os03g16718
OsAffx.31578.4.S1_at--36--1212Chr03:9243229..9243253 (25 bp)
AGTTTGGGCCAGATTTCGCGAGGAT
LOC_Os03g16718
OsAffx.31578.4.S1_at--3--10832Chr03:9243226..9243250 (25 bp)
TTGGGCCAGATTTCGCGAGGATATC
LOC_Os03g16718
OsAffx.31578.4.S1_at--483--192Chr03:9243217..9243241 (25 bp)
ATTTCGCGAGGATATCTGTGCTTGG
LOC_Os03g16718
OsAffx.31578.4.S1_at--647--4052Chr03:9243211..9243235 (25 bp)
CGAGGATATCTGTGCTTGGGAACAA
LOC_Os03g16718
OsAffx.31578.4.S1_at--1046--471Chr03:9243204..9243228 (25 bp)
ATCTGTGCTTGGGAACAAGTCCGCT
LOC_Os03g16718
Target Sequence 
TGCGCTGCTCCACCCGATAGTGGCGGCGGCGCGGGGGCCCTGGGAGTCGCCGAGGATGCCGAGGTCGATGTCGACGTCGT
CCGCGTCCACGGCCATGGCGTCCCCGTCCGCATCCGGCGTGCGCCACAGAAGCGGTGGCATGGGGAGCGACGCCTCAGCT
GCTGTGGCGGCGGCGTCAATGGGGGAAGGGGAAGCGGAAGCTCCTTGCTCCGGGACGAAAATCAGATTCAGTGTAAAGTT
AAGGGACATCAGATGAACTTATTCCGCCTAGCAAGAGATGCGCGACGCTCGCTCGGGGAGTTTGGGCCAGATTTCGCGAG
GATATCTGTGCTTGGGAACAAGTCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31578.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis