Browse Element(s) Details


OsAffx.25111.1.S1_at

Description tigr:9631.m01627
TID=OsAffx.25111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1668011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16660NANA3+9174560..9176278hypothetical protein
LOC_Os03g16670Os.11265.1.S1_at10/113+9181592..9183768haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os03g16680OsAffx.25111.1.S1_at11/113+9196097..9196459hypothetical protein
LOC_Os03g16690Os.5423.1.S1_at11/113+9197870..9203156Oxysterol-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25111.1.S1_at--1155--9631Chr03:9196138..9196162 (25 bp)
TCAGGTGTGCAAGTATAGCGGGAAC
LOC_Os03g16680
OsAffx.25111.1.S1_at--69--10011Chr03:9196153..9196177 (25 bp)
TAGCGGGAACAAGACCACATTCGAT
LOC_Os03g16680
OsAffx.25111.1.S1_at--936--5851Chr03:9196165..9196189 (25 bp)
GACCACATTCGATGTGTTTCGCATG
LOC_Os03g16680
OsAffx.25111.1.S1_at--282--6851Chr03:9196180..9196204 (25 bp)
GTTTCGCATGGAGTCCATGGTTGCA
LOC_Os03g16680
OsAffx.25111.1.S1_at--14--10851Chr03:9196206..9196230 (25 bp)
TTGGGCAACAAGTGCACCTTCTCGA
LOC_Os03g16680
OsAffx.25111.1.S1_at--322--5671Chr03:9196229..9196253 (25 bp)
GACATCCGCCACTTTGGATTGGTAC
LOC_Os03g16680
OsAffx.25111.1.S1_at--600--4171Chr03:9196235..9196259 (25 bp)
CGCCACTTTGGATTGGTACACCACA
LOC_Os03g16680
OsAffx.25111.1.S1_at--687--10791Chr03:9196247..9196271 (25 bp)
TTGGTACACCACAGACTCAAACTTC
LOC_Os03g16680
OsAffx.25111.1.S1_at--88--2151Chr03:9196257..9196281 (25 bp)
ACAGACTCAAACTTCTCGTCATCGC
LOC_Os03g16680
OsAffx.25111.1.S1_at--560--4011Chr03:9196283..9196307 (25 bp)
CGTCGTAGGCTTCGCGTCGACCATC
LOC_Os03g16680
OsAffx.25111.1.S1_at--396--1291Chr03:9196390..9196414 (25 bp)
AGATGAATGCCATGGCAGGGAGCTC
LOC_Os03g16680
Target Sequence 
TCAGGTGTGCAAGTATAGCGGGAACAAGACCACATTCGATGTGTTTCGCATGGAGTCCATGGTTGCACTTGGGCAACAAG
TGCACCTTCTCGACATCCGCCACTTTGGATTGGTACACCACAGACTCAAACTTCTCGTCATCGCCCGTCGTAGGCTTCGC
GTCGACCATCGTCGGGAGCGCCCAAAGCTCGGTGGTGAGGAGCCCACCCTGTGGGAATGGGGAGTCGAGGACAAGTTGAG
GAAGAGAAACCAAGATGAATGCCATGGCAGGGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis