Browse Element(s) Details


Os.11299.1.S1_x_at

Description gb:AK100157.1
DB_XREF= gi:32985366
TID=Os.11299.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042H09.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019I23, full insert sequence.
FL= gb:AK100157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4112010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein
LOC_Os10g41130OsAffx.18596.1.S1_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41130OsAffx.18596.1.S1_x_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11299.1.S1_x_at--576--8991Chr10:21754814..21754838 (25 bp)
TGAAGCTTCTGTACTCCTACCTTAA
LOC_Os10g41120
Os.11299.1.S1_x_at--855--9971Chr10:21754831..21754855 (25 bp)
TACCTTAAGGAGTTCGTGCCCAGCG
LOC_Os10g41120
Os.11299.1.S1_x_at--780--2531Chr10:21754884..21754908 (25 bp)
AACTCTGCTGCATCGAACTGTCAAT
LOC_Os10g41120
Os.11299.1.S1_x_at--1060--7851Chr10:21754912..21754936 (25 bp)
GGTATTGATGCTGCTGAATCCTTCA
LOC_Os10g41120
Os.11299.1.S1_x_at--906--891Chr10:21754936..21754960 (25 bp)
AGGCGAGCTGAGTTCTTCGTGCACA
LOC_Os10g41120
Os.11299.1.S1_x_at--689--8711Chr10:21755042..21755066 (25 bp)
TGTCTCTTCAGTCTCATGCAAATGC
LOC_Os10g41120
Os.11299.1.S1_x_at--277--6351Chr10:21755161..21755185 (25 bp)
GATGCGCCAAATGTCTTCGAGGGAA
LOC_Os10g41120
Os.11299.1.S1_x_at--244--5271Chr10:21755229..21755253 (25 bp)
GAATCCATTGATACAGAGGCCTCTG
LOC_Os10g41120
Os.11299.1.S1_x_at--181--891Chr10:21755245..21755269 (25 bp)
AGGCCTCTGTATCGATTTTTGCTCA
LOC_Os10g41120
Os.11299.1.S1_x_at--661--951Chr10:21755269..21755294 (25 bp)
AGGACATTCTTGTTCTGCCCATGGG
LOC_Os10g41120
Os.11299.1.S1_x_at--1078--8071NONE
GGAGCGATATTGCTCTCAGTTGCAA
NONE
Target Sequence 
TGAAGCTTCTGTACTCCTACCTTAAGGAGTTCGTGCCCAGCGGATGTGTACCGCCGCGTAATATGGGTGGAACTCTGCTG
CATCGAACTGTCAATGATGGTATTGATGCTGCTGAATCCTTCAGGCGAGCTGAGTTCTTCGTGCACACACTCATCCAGTT
CTGGCTTGTTGGAGATGACTTCTCGCCACTGGCTGTGCAGACTTGCCGTGCATATGGGCTCCCTTTACTGTCTCTTCAGT
CTCATGCAAATGCCACATTGGTTGAGCAGCCGCCAGCACCAGGACTCGGCGATGCGGTGAAGCTTTTTGTGATGTATATG
AACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCGAGGGAATATCTTCATGGAGGGAGGCATGCAACAG
CCCTGTTGGATACTGGAATCCATTGATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCATGGG
TGTAGAATAAAAATGTGCAAGGTTTCTTGCATGAAATCTTAAGGGCAAGGAACTCAGAGGTGATTGGAGCGATATTGCTC
TCAGTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11299.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis